free software to estimate dS and dN in pairwise comparisons

Carnë Draug <[email protected]> Tue, 10 Jan 2017 20:19:21 +0000

Newsgroups	gmane.comp.lang.perl.bio.general
Message-ID	<CAPOrs_1BmVe1SxabomDpAdr587VBiO_BdoA_auQtc8wKrcxquw@mail.gmail.com>

I am looking for a piece of free software to estimate synonymous and
non-synonymous (dS and dN) distances between aligned sequences.

I have found codeml on Bio::Tools::Run::Phylo::PAML::Codeml but that
is not free software (it's for academic use only).  Can anyone suggest
an alternative?

Thank you
Carnë

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