Re: reading gz fastq File
Roy Chaudhuri <[email protected]> Wed, 27 Feb 2019 13:22:28 +0000
| Newsgroups | gmane.comp.lang.perl.bio.general |
|---|---|
| Message-ID | <[email protected]> |
Q29ycmVjdGlvbiAtIGl0J3Mgbm90IGEgYnVnIHNpbmNlIHRoZSBTZXFJTyBkb2N1bWVudGF0aW9u IGZvciAxLjcuMSBub3cgCnN0YXRlcyAiVG8gcmVhZCBmcm9tIG9yIHdyaXRlIHRvIGEgcGlwZWQg Y29tbWFuZCwgb3BlbiBhIGZpbGVoYW5kbGUgYW5kIAp1c2UgdGhlIC1maCBvcHRpb24uIi4KClRo ZSByZWxldmFudCAoY2xvc2VkKSBidWcgaXMgaGVyZToKaHR0cHM6Ly9naXRodWIuY29tL2Jpb3Bl cmwvYmlvcGVybC1saXZlL2lzc3Vlcy8xMTcKCkNoZWVycywKUm95LgoKT24gMjcvMDIvMjAxOSAx MzoxMSwgUm95IENoYXVkaHVyaSB3cm90ZToKPiBIaSBTaGFsdSwKPiAKPiBZZXMsIEkgY2FuIHJl cGxpY2F0ZSB0aGlzIGVycm9yIHdpdGggYmlvcGVybCAxLjcuMSwgYnV0IDEuNi45MjMgd29ya3Mg YXMgCj4gZXhwZWN0ZWQuIEkgdGhpbmsgaXQncyBhIGJ1ZyBzaW5jZSB0aGUgZG9jcyBzdWdnZXN0 IHRoYXQgaXQgc2hvdWxkIHdvcmsuCj4gCj4gQXMgYSB3b3JrYXJvdW5kIHlvdSBjYW4gdXNlOgo+ IAo+IG9wZW4gbXkgJGZoLCAiZ3VuemlwIC1jICRBUkdWWzBdfCIgb3IgZGllICQhOwo+IG15ICRp bj1CaW86OlNlcUlPLT5uZXcoLWZoPT4kZmgsIC1mb3JtYXQ9PidmYXN0cScpOwo+IAo+IENoZWVy cywKPiBSb3kuCj4gCj4gT24gMjUvMDIvMjAxOSAxNjowMCwgc2hhbHUgc2hhcm1hIHdyb3RlOgo+ PiBIaSBFdmVyeW9uZSwKPj4gwqDCoCDCoCBTbyBpIGFtIHRyeWluZyB0byB3b3JrIG9uIGd6aXAg ZmFzdHEgZmlsZXMuIEluIHBhc3QgbXkgc2NyaXB0IAo+PiB1c2VkIHRvIHdvcmsgZmluZS4gTm93 IHdoZW4gaSByYW4gdGhlIHNhbWUgc2NyaXB0IGl0IGdpdmVzIG1lIGFuIGVycm9yLgo+PiBJIGFt IGp1c3QgcGFzdGluZyBmZXcgbGluZXMgZm9yIGV4YW1wbGUgYW5kIGFuIGVycm9yIG1lc3NhZ2Uu Cj4+IFdvdWxkIHJlYWxseSBhcHByZWNpYXRlIHlvdXIgaGVscC4KPj4KPj4gdXNlIEJpbzo6U2Vx SU87Cj4+Cj4+IHVzZSBCaW86OlNlcTo6UXVhbGl0eTsKPj4KPj4gJGluID0gQmlvOjpTZXFJTy0+ bmV3KC1maWxlID0+ICJndW56aXAgLWMgJEFSR1ZbMF18IiwgLWZvcm1hdCA9PiAKPj4gJ2Zhc3Rx Jyk7Cj4+Cj4+IHdoaWxlKG15ICRzZXEgPSAkaW4tPm5leHRfc2VxKXsKPj4KPj4gbXkgJGlkID0g JHNlcS0+aWQ7Cj4+Cj4+IHByaW50ICIkaWRcbiI7Cj4+Cj4+IH0KPj4KPj4KPj4gRXJyb3IgbWVz c2FnZToKPj4KPj4gTVNHOiBDb3VsZCBub3QgcmVhZCBmaWxlICdndW56aXAgLWMgY29tLmZhc3Rx Lmd6fCc6IE5vIHN1Y2ggZmlsZSBvciAKPj4gZGlyZWN0b3J5Cj4+Cj4+IFNUQUNLOiBFcnJvcjo6 dGhyb3cKPj4KPj4gU1RBQ0s6IEJpbzo6Um9vdDo6Um9vdDo6dGhyb3cgCj4+IC91c3IvbG9jYWwv YXBwcy9lYi9CaW9QZXJsLzEuNy4xLWZvc3MtMjAxNmItUGVybC01LjI0LjEvbGliL3Blcmw1L3Np dGVfcGVybC81LjI0LjEvQmlvL1Jvb3QvUm9vdC5wbTo0NDcgCj4+Cj4+Cj4+IFNUQUNLOiBCaW86 OlJvb3Q6OklPOjpfaW5pdGlhbGl6ZV9pbyAKPj4gL3Vzci9sb2NhbC9hcHBzL2ViL0Jpb1Blcmwv MS43LjEtZm9zcy0yMDE2Yi1QZXJsLTUuMjQuMS9saWIvcGVybDUvc2l0ZV9wZXJsLzUuMjQuMS9C aW8vUm9vdC9JTy5wbToyNjggCj4+Cj4+Cj4+IFNUQUNLOiBCaW86OlNlcUlPOjpfaW5pdGlhbGl6 ZSAKPj4gL3Vzci9sb2NhbC9hcHBzL2ViL0Jpb1BlcmwvMS43LjEtZm9zcy0yMDE2Yi1QZXJsLTUu MjQuMS9saWIvcGVybDUvc2l0ZV9wZXJsLzUuMjQuMS9CaW8vU2VxSU8ucG06NTEzIAo+Pgo+Pgo+ PiBTVEFDSzogQmlvOjpTZXFJTzo6ZmFzdHE6Ol9pbml0aWFsaXplIAo+PiAvdXNyL2xvY2FsL2Fw cHMvZWIvQmlvUGVybC8xLjcuMS1mb3NzLTIwMTZiLVBlcmwtNS4yNC4xL2xpYi9wZXJsNS9zaXRl X3BlcmwvNS4yNC4xL0Jpby9TZXFJTy9mYXN0cS5wbTozMCAKPj4gPGh0dHA6Ly9mYXN0cS5wbToz MD4KPj4KPj4gU1RBQ0s6IEJpbzo6U2VxSU86Om5ldyAKPj4gL3Vzci9sb2NhbC9hcHBzL2ViL0Jp b1BlcmwvMS43LjEtZm9zcy0yMDE2Yi1QZXJsLTUuMjQuMS9saWIvcGVybDUvc2l0ZV9wZXJsLzUu MjQuMS9CaW8vU2VxSU8ucG06Mzg5IAo+Pgo+Pgo+PiBTVEFDSzogQmlvOjpTZXFJTzo6bmV3IAo+ PiAvdXNyL2xvY2FsL2FwcHMvZWIvQmlvUGVybC8xLjcuMS1mb3NzLTIwMTZiLVBlcmwtNS4yNC4x L2xpYi9wZXJsNS9zaXRlX3BlcmwvNS4yNC4xL0Jpby9TZXFJTy5wbTo0MzUgCj4+Cj4+Cj4+IFNU QUNLOiB0ZXN0R1oucGw6NQo+Pgo+Pgo+PiBUaGFua3MKPj4KPj4gU2hhbHUKPj4KPj4KPj4gX19f X19fX19fX19fX19fX19fX19fX19fX19fX19fX19fX19fX19fX19fX19fX18KPj4gQmlvcGVybC1s IG1haWxpbmcgbGlzdAo+PiBCaW9wZXJsLWxAbWFpbG1hbi5vcGVuLWJpby5vcmcKPj4gaHR0cDov L21haWxtYW4ub3Blbi1iaW8ub3JnL21haWxtYW4vbGlzdGluZm8vYmlvcGVybC1sCj4+Cl9fX19f X19fX19fX19fX19fX19fX19fX19fX19fX19fX19fX19fX19fX19fX19fCkJpb3BlcmwtbCBtYWls aW5nIGxpc3QKQmlvcGVybC1sQG1haWxtYW4ub3Blbi1iaW8ub3JnCmh0dHA6Ly9tYWlsbWFuLm9w ZW4tYmlvLm9yZy9tYWlsbWFuL2xpc3RpbmZvL2Jpb3BlcmwtbA==