Stories for 2010-03-28

use Perl Daily Newsletter

In this issue:
    * BioPerl and the Google Summer of Code
    * New CPAN Distributions for March 27, 2010

+--------------------------------------------------------------------+
| BioPerl and the Google Summer of Code                              |
|   posted by brian_d_foy on Friday March 26, @22:07 (User Journal)  |
|   http://use.perl.org/article.pl?sid=10/03/27/0147247              |
+--------------------------------------------------------------------+

(original post [0]here)

In addition to The Perl Foundation being [1]accepted into GSoC 2010,
BioPerl is now also part of the Google Summer of Code! The Open
Bioinformatics Foundation, which also includes BioPython, BioRuby, and
others, has been accepted into the Google Summer of Code for 2010. We are
actively looking for students interested in OBF-related bioinformatics
projects; new ideas are welcome. Project ideas and other details can be
found here:
  * [2]Main OBF GSoC page
  * [3]BioPerl-specific projects

This isn't the first year BioPerl has been part of GSoC. A successful
project [4]was recently published by 2008 GSoC student Mira Han for
developing a phyloXML parser for BioPerl.

Discuss this story at:
    http://use.perl.org/comments.pl?sid=10/03/27/0147247

Links:
    0. http://blogs.perl.org/users/pyrimidine/2010/03/bioperl-and-the-google-summer-of-code.html
    1. http://blogs.perl.org/users/eric_wilhelm/2010/03/open-source-summer-perl-jobs-for-college-students.html
    2. http://www.open-bio.org/wiki/Google_Summer_of_Code
    3. http://www.bioperl.org/wiki/Google_Summer_of_Code
    4. http://www.ncbi.nlm.nih.gov/pubmed/19860910


+--------------------------------------------------------------------+
| New CPAN Distributions for March 27, 2010                          |
|   posted by pudge on Saturday March 27, @11:30 (Module Listings)   |
|   http://use.perl.org/article.pl?sid=10/03/27/1530207              |
+--------------------------------------------------------------------+

  * [0]ASP4x-Router-0.004 -- URL Routing for your ASP4 web application.
  * [1]ASP4x-Router-0.005 -- URL Routing for your ASP4 web application.
  * [2]AnyEvent-CouchDB-1.17 -- a non-blocking CouchDB client based on
    jquery.couch.js
  * [3]AnyEvent-I3-0.03 -- communicate with the i3 window manager
  * [4]App-cpanminus-0.9929 -- get, unpack, build and install modules
    from CPAN
  * [5]Bio-BigFile-1.01
  * [6]CGI-Auth-FOAF_SSL-1.00_03 -- authentication using FOAF+SSL
  * [7]CatalystX-LeakChecker-0.06 -- Debug memory leaks in Catalyst
    applications
  * [8]Chart-Gnuplot-0.13 -- Plot graph using Gnuplot on the fly
  * [9]Collision-2D-0.06 -- Continuous 2d collision detection
  * [10]DB-Pluggable-1.100850 -- Add plugin support for the Perl debugger
  * [11]DB-Pluggable-1.100851 -- Add plugin support for the Perl debugger
  * [12]DB-Pluggable-StackTraceAsHTML-1.100850 -- Add debugger command to
    see stack trace as HTML
  * [13]DBD-Wire10-1.06 -- Pure Perl MySQL, Sphinx, and Drizzle driver
    for DBI.
  * [14]DBIx-DBSchema-0.39 -- Database-independent schema objects
  * [15]DBIx-Lookup-Field-1.100850 -- Create a lookup hash from a
    database table
  * [16]Data-DPath-0.34 -- DPath is not XPath!
  * [17]Data-Inherited-1.100860 -- Hierarchy-wide accumulation of list
    and hash results
  * [18]Data-Polipo-0.02 -- Perl extension for Polipo cache files
  * [19]Data-Semantic-Net-1.100850 -- Semantic data classes for
    net-related data
  * [20]Data-Semantic-URI-1.100850 -- Semantic data classes for
    URI-related data
  * [21]Data-Storage-1.100850 -- Base class for storages
  * [22]Data-Timeline-1.100850 -- Time line represented as an object
  * [23]Data-Timeline-1.100860 -- Time line represented as an object
  * [24]Devel-Memalyzer-0.001 -- Base framework for analyzing program
    memory usage
  * [25]Devel-SearchINC-1.100850 -- Loading Perl modules from their
    development directories
  * [26]Devel-TraceINC-1.100850 -- Trace who is loading which perl
    modules
  * [27]Dist-Zilla-Plugin-ReportVersions-1.100860 -- write a test that
    reports used module versions
  * [28]Error-Hierarchy-1.100850 -- Support for hierarchical exception
    classes
  * [29]Error-Return-1.100850 -- return(), skipping a scope
  * [30]File-Find-Upwards-1.100860 -- Look for a file in the current
    directory and upwards
  * [31]Finance-YahooQuote-0.24 -- Get stock quotes from Yahoo! Finance
  * [32]FusionInventory-Agent-Task-OcsDeploy-1.0.1 -- OCS Inventory
    Software deployment support for FusionInvnetory Agent
  * [33]Geo-Coder-Multiple-0.61 -- Module to tie together multiple
    Geo::Coder::* modules
  * [34]Geo-ReadGRIB-1.3_9 -- Perl extension that gives read access to
    GRIB 1 "GRIdded Binary" format Weather data files.
  * [35]Getopt-Attribute-1.100860 -- Attribute wrapper for Getopt::Long
  * [36]Getopt-Inherited-1.100860 -- Handling inherited command-line
    options
  * [37]HTML-Template-Pro-0.94 -- Perl/XS module to use HTML Templates
    from CGI scripts
  * [38]HTTP-ProxyPAC-0.31 -- use a PAC (Proxy Auto Config) file to get
    proxy info
  * [39]Hash-Rename-1.100860 -- Rename hash keys
  * [40]Judy-0.20 -- Library for creating and accessing dynamic arrays
  * [41]KinoSearch-0.30_09 -- Search engine library.
  * [42]Loop-Control-1.100860 -- FIRST and NEXT functions for loops
  * [43]Loop-Control-1.100861 -- FIRST and NEXT functions for loops
  * [44]Module-Cloud-1.100860 -- Generates a tag cloud for modules used
    in given code
  * [45]Module-Install-DOAPChangeSets-0.03 -- write your distribution
    change log in RDF
  * [46]Module-Pluggable-Loader-1.100860 -- Just load plugins, aware of
    development directories
  * [47]Moose-1.01 -- A postmodern object system for Perl 5
  * [48]MooseX-Types-Structured-0.21 -- Structured Type Constraints for
    Moose
  * [49]MooseX-Types-XMLSchema-0.02 -- XMLSchema compatible Moose types
    library
  * [50]Mouse-0.52 -- Moose minus the antlers
  * [51]Net-IP-Match-1.100860 -- Efficiently match IP addresses against
    IP ranges
  * [52]Net-Lighthouse-0.06 -- Perl interface to lighthouseapp.com
  * [53]Net-Wire10-1.06 -- Pure Perl driver for MySQL, Sphinx and
    Drizzle.
  * [54]Number-Rangify-1.100860 -- Optimize a list of values into ranges
  * [55]ParseLex-2.19
  * [56]ParseTemplate-3.02
  * [57]PerlIO-via-Pipe-1.100860 -- PerlIO layer to filter input through
    a Text::Pipe
  * [58]Plack-0.99_23 -- Perl Superglue for Web frameworks and Web
    Servers (PSGI toolkit)
  * [59]Plack-App-Proxy-0.15 -- proxy requests
  * [60]PostScript-Report-0.06 -- Produce formatted reports in PostScript
  * [61]RDF-RDFa-Parser-1.00.001 -- flexible RDFa parser
  * [62]Regexp-MinLength-0.03 -- Perl extension for determining the
    minimum matching length for a regular expression
  * [63]Router-Generic-0.007 -- A general-purpose router for the web.
  * [64]Router-Generic-0.008 -- A general-purpose router for the web.
  * [65]SOOT-0.06 -- Use ROOT from Perl
  * [66]SWISH-Prog-KSx-0.10 -- Swish3 KinoSearch backend
  * [67]Scope-Guard-0.12 -- lexically-scoped resource management
  * [68]Search-Query-0.11 -- polyglot query parsing
  * [69]Search-Query-Dialect-KSx-0.06 -- KinoSearch query dialect
  * [70]Software-License-0.015 -- packages that provide templated
    software licenses
  * [71]Test-Requires-0.04 -- Checks to see if the module can be loaded
  * [72]Test-Requires-0.05 -- Checks to see if the module can be loaded
  * [73]Test-Skip-UnlessExistsExecutable-0.041 -- skips tests unless
    executable exists
  * [74]Tie-RangeHash-1.05 -- Allows hashes to associate values with a
    range of keys
  * [75]WWW-Sitemapper-0.01 -- Create site map by scanning a web site.
  * [76]WWW-Sitemapper-0.02 -- Create text, html and xml sitemap by
    scanning a web site.
  * [77]WWW-TWikiClient-0.11 -- WWW::Mechanize-based client to access a
    TWiki.
  * [78]WWW-Tube8-v1.1.2 -- Get video informations from tube8.com
  * [79]Wx-Perl-Packager-0.24
  * [80]Yahoo-Marketing-7.01 -- an interface for Yahoo! Search
    Marketing's Web Services.
  * [81]nz_top-0.0.1
  * [82]threads-1.77 -- Perl interpreter-based threads
  * [83]threads-lite-0.022 -- Yet another threads library

Discuss this story at:
    http://use.perl.org/comments.pl?sid=10/03/27/1530207

Links:
    0. http://search.cpan.org/~johnd/ASP4x-Router-0.004
    1. http://search.cpan.org/~johnd/ASP4x-Router-0.005
    2. http://search.cpan.org/~beppu/AnyEvent-CouchDB-1.17
    3. http://search.cpan.org/~mstplbg/AnyEvent-I3-0.03
    4. http://search.cpan.org/~miyagawa/App-cpanminus-0.9929
    5. http://search.cpan.org/~lds/Bio-BigFile-1.01
    6. http://search.cpan.org/~tobyink/CGI-Auth-FOAF_SSL-1.00_03
    7. http://search.cpan.org/~flora/CatalystX-LeakChecker-0.06
    8. http://search.cpan.org/~kwmak/Chart-Gnuplot-0.13
    9. http://search.cpan.org/~zpmorgan/Collision-2D-0.06
   10. http://search.cpan.org/~marcel/DB-Pluggable-1.100850
   11. http://search.cpan.org/~marcel/DB-Pluggable-1.100851
   12. http://search.cpan.org/~marcel/DB-Pluggable-StackTraceAsHTML-1.100850
   13. http://search.cpan.org/~dubex/DBD-Wire10-1.06
   14. http://search.cpan.org/~ivan/DBIx-DBSchema-0.39
   15. http://search.cpan.org/~marcel/DBIx-Lookup-Field-1.100850
   16. http://search.cpan.org/~schwigon/Data-DPath-0.34
   17. http://search.cpan.org/~marcel/Data-Inherited-1.100860
   18. http://search.cpan.org/~toru/Data-Polipo-0.02
   19. http://search.cpan.org/~marcel/Data-Semantic-Net-1.100850
   20. http://search.cpan.org/~marcel/Data-Semantic-URI-1.100850
   21. http://search.cpan.org/~marcel/Data-Storage-1.100850
   22. http://search.cpan.org/~marcel/Data-Timeline-1.100850
   23. http://search.cpan.org/~marcel/Data-Timeline-1.100860
   24. http://search.cpan.org/~exodist/Devel-Memalyzer-0.001
   25. http://search.cpan.org/~marcel/Devel-SearchINC-1.100850
   26. http://search.cpan.org/~marcel/Devel-TraceINC-1.100850
   27. http://search.cpan.org/~marcel/Dist-Zilla-Plugin-ReportVersions-1.100860
   28. http://search.cpan.org/~marcel/Error-Hierarchy-1.100850
   29. http://search.cpan.org/~marcel/Error-Return-1.100850
   30. http://search.cpan.org/~marcel/File-Find-Upwards-1.100860
   31. http://search.cpan.org/~edd/Finance-YahooQuote-0.24
   32. http://search.cpan.org/~goneri/FusionInventory-Agent-Task-OcsDeploy-1.0.1
   33. http://search.cpan.org/~friffin/Geo-Coder-Multiple-0.61
   34. http://search.cpan.org/~frankcox/Geo-ReadGRIB-1.3_9
   35. http://search.cpan.org/~marcel/Getopt-Attribute-1.100860
   36. http://search.cpan.org/~marcel/Getopt-Inherited-1.100860
   37. http://search.cpan.org/~viy/HTML-Template-Pro-0.94
   38. http://search.cpan.org/~mackenna/HTTP-ProxyPAC-0.31
   39. http://search.cpan.org/~marcel/Hash-Rename-1.100860
   40. http://search.cpan.org/~jjore/Judy-0.20
   41. http://search.cpan.org/~karman/KinoSearch-0.30_09
   42. http://search.cpan.org/~marcel/Loop-Control-1.100860
   43. http://search.cpan.org/~marcel/Loop-Control-1.100861
   44. http://search.cpan.org/~marcel/Module-Cloud-1.100860
   45. http://search.cpan.org/~tobyink/Module-Install-DOAPChangeSets-0.03
   46. http://search.cpan.org/~marcel/Module-Pluggable-Loader-1.100860
   47. http://search.cpan.org/~flora/Moose-1.01
   48. http://search.cpan.org/~jjnapiork/MooseX-Types-Structured-0.21
   49. http://search.cpan.org/~ajgb/MooseX-Types-XMLSchema-0.02
   50. http://search.cpan.org/~gfuji/Mouse-0.52
   51. http://search.cpan.org/~marcel/Net-IP-Match-1.100860
   52. http://search.cpan.org/~sunnavy/Net-Lighthouse-0.06
   53. http://search.cpan.org/~dubex/Net-Wire10-1.06
   54. http://search.cpan.org/~marcel/Number-Rangify-1.100860
   55. http://search.cpan.org/~pscust/ParseLex-2.19
   56. http://search.cpan.org/~pscust/ParseTemplate-3.02
   57. http://search.cpan.org/~marcel/PerlIO-via-Pipe-1.100860
   58. http://search.cpan.org/~miyagawa/Plack-0.99_23
   59. http://search.cpan.org/~hiratara/Plack-App-Proxy-0.15
   60. http://search.cpan.org/~cjm/PostScript-Report-0.06
   61. http://search.cpan.org/~tobyink/RDF-RDFa-Parser-1.00.001
   62. http://search.cpan.org/~lmetcalf/Regexp-MinLength-0.03
   63. http://search.cpan.org/~johnd/Router-Generic-0.007
   64. http://search.cpan.org/~johnd/Router-Generic-0.008
   65. http://search.cpan.org/~smueller/SOOT-0.06
   66. http://search.cpan.org/~karman/SWISH-Prog-KSx-0.10
   67. http://search.cpan.org/~chocolate/Scope-Guard-0.12
   68. http://search.cpan.org/~karman/Search-Query-0.11
   69. http://search.cpan.org/~karman/Search-Query-Dialect-KSx-0.06
   70. http://search.cpan.org/~rjbs/Software-License-0.015
   71. http://search.cpan.org/~tokuhirom/Test-Requires-0.04
   72. http://search.cpan.org/~tokuhirom/Test-Requires-0.05
   73. http://search.cpan.org/~kitano/Test-Skip-UnlessExistsExecutable-0.041
   74. http://search.cpan.org/~rrwo/Tie-RangeHash-1.05
   75. http://search.cpan.org/~ajgb/WWW-Sitemapper-0.01
   76. http://search.cpan.org/~ajgb/WWW-Sitemapper-0.02
   77. http://search.cpan.org/~schwigon/WWW-TWikiClient-0.11
   78. http://search.cpan.org/~bayashi/WWW-Tube8-v1.1.2
   79. http://search.cpan.org/~mdootson/Wx-Perl-Packager-0.24
   80. http://search.cpan.org/~shenj/Yahoo-Marketing-7.01
   81. http://search.cpan.org/~jcua/nz_top-0.0.1
   82. http://search.cpan.org/~jdhedden/threads-1.77
   83. http://search.cpan.org/~leont/threads-lite-0.022



Copyright 1997-2008 pudge.  All rights reserved.


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