Re: [ITK-users] Cardiac Deformation using Segmentation and Registration of Ultrasound Images

Hello again,

Matt, thank you for solving the example issue. I tried to use the filter
and although it worked great for a 2D png image, it failed for a 2D jpg and
dicom images as well as for a 3D nrrd volume. I got the error "Could not
create ImageIO" so maybe that has to do with the ImageIOFactory.

I liked the suggested and accepted values when I run the .exe but maybe to
avoid confusion you could replace the
"Weickert diffusion type. Accepted values: Edge, Coherence. Default: Edge."
with
Weickert diffusion type. Accepted values: EED cEED CED cCED Isotropic"

Best regards,
Thanos

On Fri, Aug 11, 2017 at 6:55 PM, Matt McCormick <[email protected]>
wrote:

> On Fri, Aug 4, 2017 at 9:36 AM, Matt McCormick
> <[email protected]> wrote:
> > Hi Thanos,
> >
> > On Thu, Aug 3, 2017 at 1:00 PM, thanos thanos <[email protected]>
> wrote:
> >> Hello everyone,
> >>
> >> Dženan, Andras and Matt thank you very much for your answers.
> >> To be honest I've tried already in the past registration with Slicer
> using
> >> Demons, B-Splines and also Elastix and Plastimach.
> >>
> >> Dženan, I read your last sentence already many times but I can't really
> >> understand what you mean by "initializing registration of time point
> n+1 by
> >> resulting transform from time point n."
> >>
> >> Matt, thank you for sharing your thoughts. I already looked at the
> >> AnisotropicDiffusionLBR paper and I have also tried the online
> interactive
> >> figures
> >> (https://insightsoftwareconsortium.github.io/
> ITKAnisotropicDiffusionLBR/).
> >> Seems to work nicely, but I wasn't sure how to build the project. I
> already
> >> configured my ITK by setting the Module_AnisotropicDiffusionLBR at the
> CMake
> >> and then I tried to build the CoherenceEnhancingDiffusion from the
> >> C:\ITK\src\Modules\Remote\AnisotropicDiffusionLBR\examples but I got "
> >> Cannot open include file: 'CoherenceEnhancingDiffusionFilter.h': No
> such
> >> file or directory " so I guess I am missing something..
> >
> > Thanks for the note. I will look into this issue and address it next
> week.
>
> This is addressed here:
>
>   http://review.source.kitware.com/#/c/22567/
>   https://github.com/InsightSoftwareConsortium/ITKAnisotropicDiffusionLBR/
> commit/3d9880d5f52c4c37e3b658abc607a13f3c3d9545
>
> I will also create a Python package for the module.
>
> Thanks,
> Matt
>

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