[ITK-users] SimpleITK R Wrapping of ChangeLabel and ChangeMap
Mathew Guilfoyle <[email protected]> Sat, 17 Feb 2018 15:28:59 +0000
| Newsgroups | gmane.comp.lib.itk.user |
|---|---|
| Message-ID | <[email protected]> |
I am struggling to find the correct way to specify a ChangeMap to supply to the ChangeLabel filter in the R wrapping of SimpleITK. I can create the filter object but supplying a R list of (vector) pairs of from/to labels causes R to crash. Looking through the SimpleITK docs the ChangeMap is specified as a std::map<double, double> structure and in the R SWIG file there is a DoubleDoubleMap() function specified which seems to be a mechanism to create the map in R. However, despite trying various ways of using the DoubleDoubleMap I cannot get it to work. I can create a DoubleDoubleMap object but then can't supplying the pairs of labels that define the map. One Python example I came across uses the DoubleDoubleMap like this: import SimpleITK as silk changeLabel = sitk.ChangeLabelImageFilter() changeMap = sitk.DoubleDoubleMap() changeMap[0] = 1 changeMap[1] = 2 etc.. Doing the equivalent indexing in R produces the error: Error: evaluation nested too deeply: infinite recursion / options(expressions=)? Error during wrapup: evaluation nested too deeply: infinite recursion / options(expressions=)? Does anyone know how to correctly interact with the DoubleDoubleMap object and/or otherwise specify a change map in R? Many thanks The ITK community is transitioning from this mailing list to discourse.itk.org. Please join us there! ________________________________ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Kitware offers ITK Training Courses, for more information visit: http://www.kitware.com/products/protraining.php Please keep messages on-topic and check the ITK FAQ at: http://www.itk.org/Wiki/ITK_FAQ Follow this link to subscribe/unsubscribe: https://itk.org/mailman/listinfo/insight-users
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