[protege-releases] Protege 3.4.4 Patch Release

We've posted an update to the 3.4 release (version number 3.4.4, build 579).

Download URL: 
http://protege.stanford.edu/download/protege/3.4/installanywhere/

If you haven't registered to use Protege, please do so before 
downloading this new patch release.

Registration URL: http://protege.stanford.edu/download/register.html


Core Protege
--------------
- Fixed a bug that caused the creation of new database projects to fail 
on certain machines.
- Fixed several caching problems that occurred when Protege is run in 
client-server mode.

Protege-OWL
---------------
- Fixed a bug that caused the native writer to output invalid statements 
when exporting database projects to OWL files.
- Fixed a bug in the Protege-OWL parser for dealing with ontologies with 
untyped resources.
- Implemented a faster algorithm for computing orphan classes in the 
Protege-OWL parser.

SQWRL
----------
- Added additional SQWRL operators to support more elaborate query 
result selection such as selecting a subset of results [1], and 
retrieving all elements from a collection [2].
- Added an ontology containing a large number of SQWRL queries to the 
set of pre-installed example ontologies.
- Updated SQWRL Query API [3].

Change Analysis
-----------------
- Bundling the new ChangeAnalysisTab plug-in [4]. The plug-in provides 
different views for exploring the annotation/change ontology associated 
with a Protege project that uses the Change Management plug-in. Changes 
and annotations can be explored based on authors, ontology terms, and 
visualized with respect to the life cycle of the project.  Many thanks 
go to Sean Falconer [5] for this contribution.

Collaborative Protege
----------------------
- Only top-level changes associated with a class are displayed. In 
previous versions, sub-changes were also shown.

BioPortal Reference
---------------------
- Updated the BioPortal Reference plug-in [6] to store the short term ID 
properly.


Best Regards,
Tim, Tania, Jennifer, Csongor, Martin, Sean

[1] http://protege.cim3.net/cgi-bin/wiki.pl?CoreSQWRL#nidBG7
[2] http://protege.cim3.net/cgi-bin/wiki.pl?CollectionsSQWRL#nidBIE
[3] http://protege.cim3.net/cgi-bin/wiki.pl?SQWRLQueryAPI
[4] http://protegewiki.stanford.edu/index.php/ChangeAnalysisTab
[5] http://www.stanford.edu/~sfalc/index.html
[6] http://protegewiki.stanford.edu/index.php/BioPortal_Reference_Plugin
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