Re: Help : Protege 4 client server (Bleeding edge version)

Dinbandhu Laxman Gauda <[email protected]> Tue, 6 Nov 2012 07:35:54 +0000

Newsgroups	gmane.comp.misc.ontology.protege.general
Message-ID	<337E541B074A3C42B29E8238923CDA7B117FC138@blrkecmbx15.ad.infosys.com>

Hi,

Thanks for looking into this Protégé 4 item and for a quick reply.  Below is a log from commons-daemon log file and ant log which gives some more information on the error. Attached is ant log as well for more details..

Couple of things I would like to know
1) I do not see any executales or ant targets to run client. 
2) I have created plugins folder under C:\Program Files\Protege OWL Server\, just want to know this is a correct place.
3) even I tried to start server using this command line statement "OWLDocService //ES//OWLServer"  , but I do not see server in running mode in both services or in taskmanager/services, both are showing Stopped.

Commons-Daemon log:
[2012-11-06 12:44:26] [info]  Commons Daemon procrun (1.0.10.0 32-bit) started
[2012-11-06 12:44:26] [info]  Running 'OWLServer' Service...
[2012-11-06 12:44:26] [info]  Starting service...
[2012-11-06 12:44:26] [error] Failed creating java 
[2012-11-06 12:44:26] [error] ServiceStart returned 1
[2012-11-06 12:44:26] [info]  Run service finished.
[2012-11-06 12:44:26] [info]  Commons Daemon procrun finished
[2012-11-06 12:55:53] [info]  Commons Daemon procrun (1.0.10.0 32-bit) started
[2012-11-06 12:55:53] [info]  Service OWLServer name OWLServer
[2012-11-06 12:55:53] [info]  Service 'OWLServer' installed
[2012-11-06 12:55:53] [info]  Commons Daemon procrun finished
[2012-11-06 12:55:53] [info]  Commons Daemon procrun (1.0.10.0 32-bit) started
[2012-11-06 12:55:53] [info]  Starting service 'OWLServer' ...
[2012-11-06 12:55:53] [info]  Commons Daemon procrun (1.0.10.0 32-bit) started
[2012-11-06 12:55:53] [info]  Running 'OWLServer' Service...
[2012-11-06 12:55:53] [info]  Starting service...
[2012-11-06 12:55:53] [error] Failed creating java 
[2012-11-06 12:55:53] [error] ServiceStart returned 1
[2012-11-06 12:55:53] [info]  Run service finished.
[2012-11-06 12:55:53] [info]  Commons Daemon procrun finished
[2012-11-06 12:55:54] [error] Failed to start 'OWLServer' service
[2012-11-06 12:55:54] [error] The data area passed to a system call is too small.
[2012-11-06 12:55:54] [info]  Start service finished.
[2012-11-06 12:55:54] [error] Commons Daemon procrun failed with exit value: 5 (Failed to start service)
[2012-11-06 12:55:55] [error] The data area passed to a system call is too small.

Ant Log:
deploy.windows:
     [echo] Deploying windows Protege OWL Server
     [echo] Will run as protege : C:/Program Files/Protege OWL Server/logs
     [exec] Current OS is Windows 7
     [exec] Executing 'C:\Program Files\Protege OWL Server\bin\OWLDocService.exe' with arguments:
     [exec] '//IS//OWLServer'
     [exec] '--Install=C:\Program Files\Protege OWL Server\bin\OWLDocService.exe'
     [exec] '--Jvm=auto'
     [exec] '--Description=Protege-OWL-Document-Service'
     [exec] '--DisplayName=OWLServer'
     [exec] '--LogPath=C:/Program Files/Protege OWL Server/logs'
     [exec] '--StdOutput=auto'
     [exec] '--StdError=auto'
     [exec] '--Startup=auto'
     [exec] '--Classpath=bin/winsvc.jar;lib/felix.jar;lib/ProtegeLauncher.jar'
     [exec] '--JvmMx=700'
     [exec] '++JvmOptions=-DentityExpansionLimit=100000000'
     [exec] '++JvmOptions=-Dfile.encoding=UTF-8'
     [exec] '++JvmOptions=-Djava.rmi.server.hostname=dinu'
     [exec] '++JvmOptions=-Dorg.protege.owl.server.configuration=metaproject.owl'
     [exec] '++JvmOptions=-Djava.util.logging.config.file=logging.properties'
     [exec] '--StartPath=C:\Program Files\Protege OWL Server'
     [exec] '--StartMode=jvm'
     [exec] '--StartClass=org.protege.owl.server.deploy.windows.WindowsOWLServer'
     [exec] '--StartParams=start'
     [exec] '--StopPath=C:\Program Files\Protege OWL Server'
     [exec] '--StopMode=jvm'
     [exec] '--StopClass=org.protege.owl.server.deploy.windows.WindowsOWLServer'
     [exec] '--StopParams=stop'
     [exec] 
     [exec] The ' characters around the executable and arguments are
     [exec] not part of the command.
     [echo] prefix C:\Program Files\Protege OWL Server\bin\OWLDocService.exe
     [exec] Current OS is Windows 7
     [exec] Executing 'C:\Program Files\Protege OWL Server\bin\OWLDocService.exe' with arguments:
     [exec] '//ES//OWLServer'
     [exec] 
     [exec] The ' characters around the executable and arguments are
     [exec] not part of the command.
      [ant] Exiting D:\work\workspace\protegeserver4\org.protege.owl.server.deploy\build.xml.

BUILD FAILED
D:\work\workspace\protegeserver4\build.xml:35: The following error occurred while executing this line:
D:\work\workspace\protegeserver4\org.protege.owl.server.deploy\build.xml:339: exec returned: 5
	at org.apache.tools.ant.taskdefs.ExecTask.runExecute(ExecTask.java:646)
	at org.apache.tools.ant.taskdefs.ExecTask.runExec(ExecTask.java:672)
	at org.apache.tools.ant.taskdefs.ExecTask.execute(ExecTask.java:498)
	at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:291)
	at sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)


Thanks
-Dinu

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Sent: Tuesday, November 06, 2012 5:10 AM
To: [email protected]
Subject: protege-discussion Digest, Vol 76, Issue 4

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Today's Topics:

   1. Re: Help : Protege 4 client server (Bleeding edge version)
      (Timothy Redmond)


----------------------------------------------------------------------

Message: 1
Date: Mon, 05 Nov 2012 15:39:22 -0800
From: Timothy Redmond <[email protected]>
To: [email protected]
Subject: Re: [protege-discussion] Help : Protege 4 client server
	(Bleeding edge version)
Message-ID: <[email protected]>
Content-Type: text/plain; charset="iso-8859-1"; Format="flowed"


I am running 32-bit windows in a virtualbox and have replicated a 
problem with your symptoms.   The windows error messages are aweful!  I 
will have to see if there is anything that I can do about this as I refine this process.

I also realized that there is an important step that is not yet documented - to be able to interact with the server you need to install the Protege client jars.  When the Protege OWL server is released, these will be included in the Protege distribution.  In the meantime, I have attached two jar files that you can put in the Protege plugins directory.

First do an svn update on the server directory - I have fixed a couple of typos.  Second, I have determined that if the server has been deployed then if the deploy target is called it will fail with exactly the "exec returned: 8" error message.  The solution is to run "ant undeploy" to clean up and then run "ant deploy" to put the service back.

I hope that this fixes the problem for you but if it doesn't I will soon write a .bat script that will let you manually start running the server.  This script would not resume running on a reboot but it will allow you to proceed even if my scripts to configure the apache daemon don't work.

You can monitor if the OWL server has been installed by looking at the Services application.  You can find this by going to the "Start" menu and searching for "services".  When you run this program it will show all the installed services and the OWL Server will show up as "OWLServer".  This is shown in the diagram that I have included below.

-Timothy.






On 11/1/12 12:27 PM, Timothy Redmond wrote:
>
> I am sorry for the delay on looking at this.  I am trying to get my 
> hands on a 32-bit windows image for testing.  But I did have one 
> thought.  Make sure that the memory.mb setting in the local.properties 
> file is less than 2048 because a 32-bit windows process can't handle 
> more than 2 gig of memory.  When I was testing this before I noticed 
> that some of the errors under windows are a bit obscure.
>
> -Timothy
>
>
> On 10/31/12 5:04 AM, Dinbandhu Laxman Gauda wrote:
>> The below issue  is resolved by fixing this line in build.xml file.
>>
>>
>> <target name="install.windows32.files" depends="jar, install.noarch.files" if="is.windows32">
>>      	<!--copy file="${service64.src}"  tofile="${service}"/>   -->
>> 	<copy file="${service32.src}"  tofile="${service}"/>
>> 	</target>
>>
>> But I am seeing other issues like..  Attached is a ant log file..
>>
>> BUILD FAILED
>> D:\work\workspace\protege-server-4\build.xml:35: The following error occurred while executing this line:
>> D:\work\workspace\protege-server-4\org.protege.owl.server.deploy\build.xml:310: exec returned: 8
>> 	at org.apache.tools.ant.taskdefs.ExecTask.runExecute(ExecTask.java:646)
>> 	at org.apache.tools.ant.taskdefs.ExecTask.runExec(ExecTask.java:672)
>> 	at org.apache.tools.ant.taskdefs.ExecTask.execute(ExecTask.java:498)
>> 	at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:291)
>> 	at sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source)
>> 	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>> 	at java.lang.reflect.Method.invoke(Method.java:597)
>> 	at org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106)
>> 	at org.apache.tools.ant.Task.perform(Task.java:348)
>> 	at org.apache.tools.ant.Target.execute(Target.java:392)
>> 	at org.apache.tools.ant.Target.performTasks(Target.java:413)
>> 	at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1399)
>> 	at org.apache.tools.ant.helper.SingleCheckExecutor.executeTargets(SingleCheckExecutor.java:38)
>> 	at org.apache.tools.ant.Project.executeTargets(Project.java:1251)
>> 	at org.apache.tools.ant.taskdefs.Ant.execute(Ant.java:442)
>> 	at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:291)
>> 	at sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source)
>> 	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>> 	at java.lang.reflect.Method.invoke(Method.java:597)
>> 	at org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106)
>> 	at org.apache.tools.ant.Task.perform(Task.java:348)
>> 	at org.apache.tools.ant.Target.execute(Target.java:392)
>> 	at org.apache.tools.ant.Target.performTasks(Target.java:413)
>> 	at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1399)
>> 	at org.apache.tools.ant.Project.executeTarget(Project.java:1368)
>> 	at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:41)
>> 	at org.apache.tools.ant.Project.executeTargets(Project.java:1251)
>> 	at org.apache.tools.ant.Main.runBuild(Main.java:811)
>> 	at org.apache.tools.ant.Main.startAnt(Main.java:217)
>> 	at org.apache.tools.ant.launch.Launcher.run(Launcher.java:280)
>> 	at org.apache.tools.ant.launch.Launcher.main(Launcher.java:109)
>>
>>
>>
>> -----Original Message-----
>> From: Dinbandhu Laxman Gauda
>> Sent: Wednesday, October 31, 2012 4:38 PM
>> To: '[email protected]'
>> Subject: RE: [protege-discussion] Help : Protege 4 client server 
>> (Bleeding edge version)
>>
>> Hi,
>>
>> I am not able to deploy Prot?g? 4 server  on Windows 7 (32 bit) even though exe is installed for x32 bit.
>>
>> Similar issue is with clean.full as well
>>
>> Attached is a log from ant build.
>>
>> Thanks
>> -Dinu
>>
>> -----Original Message-----
>> From:[email protected]  
>> [mailto:[email protected]] On Behalf Of 
>> Timothy Redmond
>> Sent: Wednesday, 31 October, 2012 12:52 
>> To:[email protected]
>> Subject: Re: [protege-discussion] Help : Protege 4 client server 
>> (Bleeding edge version)
>>
>> On 10/30/2012 10:08 PM, Dinbandhu Laxman Gauda wrote:
>>> Hi Timothy,
>>>
>>> Attached is a log text file.  I looked at org.protege.owl.server.jar 
>>> file and looks like SetMetaprojectDataDir.class file is missing. I 
>>> infact .java file is also missing from 
>>> org.protege.owl.server\src\main\java\org\protege\owl\server\command
>>> folder
>>>
>>> Thanks
>>> -Dinu
>>>
>> Thanks very much for the help.  This problem was completely my 
>> mistake - actually I made several mistakes to make this happen.  It 
>> has been broken for a bit and I didn't notice.  If you update and try 
>> again I think that it will work.  (I just ran the installer in both 
>> linux and
>> windows.)
>>
>> One of the things that I changed to fix this was to change the ant clean target and add a clean.full target.  The clean target now just cleans up the built artifacts in the checked out directories.  The clean.full target will also clean up the Protege OWL server files that have been installed in the system directories.
>>
>> You have also helped me see that I can simplify this process when the server is ready for release.  The current version involves two projects (the server project and the server deployer project) that get built.  If anything goes wrong in either one then the build fails.  But really all we need to distribute is the deployer project together with a built copy of the server.
>>
>> -Timothy
>>
>>
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log-with-everything.txt (text/plain, 79.3 KB)

Apache Ant(TM) version 1.8.4 compiled on May 22 2012
Trying the default build file: build.xml
Buildfile: D:\work\workspace\protegeserver4\build.xml
Detected Java version: 1.6 in: D:\work\Java\jdk1.6.0_30\jre
Detected OS: Windows 7
parsing buildfile D:\work\workspace\protegeserver4\build.xml with URI = file:/D:/work/workspace/protegeserver4/build.xml
Project base dir set to: D:\work\workspace\protegeserver4
parsing buildfile jar:file:/D:/work/apps/apache-ant-1.8.4/lib/ant.jar!/org/apache/tools/ant/antlib.xml with URI = jar:file:/D:/work/apps/apache-ant-1.8.4/lib/ant.jar!/org/apache/tools/ant/antlib.xml from a zip file
 [property] Loading D:\work\workspace\protegeserver4\local.properties
Build sequence for target(s) `deploy' is [build.server, deploy]
Complete build sequence is [build.server, deploy, clean, undeploy, install, clean.full, init, ]

build.server:
     [echo] ----------------------------------------Document Server Build
Project base dir set to: D:\work\workspace\protegeserver4\org.protege.owl.server
      [ant] calling target(s) [jar] in build file D:\work\workspace\protegeserver4\org.protege.owl.server\build.xml
parsing buildfile D:\work\workspace\protegeserver4\org.protege.owl.server\build.xml with URI = file:/D:/work/workspace/protegeserver4/org.protege.owl.server/build.xml
Project base dir set to: D:\work\workspace\protegeserver4\org.protege.owl.server
 [property] Loading D:\work\workspace\protegeserver4\org.protege.owl.server\local.properties
 [property] Unable to find property file: D:\work\workspace\protegeserver4\org.protege.owl.server\local.properties
 [property] Loading D:\work\workspace\protegeserver4\org.protege.owl.server\version.properties
 [property] Loading Environment env.
Property "env.BUNDLOR_HOME" has not been set
Override ignored for property "build"
      [ant] Entering D:\work\workspace\protegeserver4\org.protege.owl.server\build.xml...
Build sequence for target(s) `jar' is [init, generate.src, compile, use.existing.manifest, bundlor.manifest, copy.resources, setup.server.framework, jar]
Complete build sequence is [init, generate.src, compile, use.existing.manifest, bundlor.manifest, copy.resources, setup.server.framework, jar, debug, testng.compile, profile, run, debug.unit.test, protege.install, clean, unit.test, ]

init:
     [echo] **********************************************************
     [echo] Using Java Version = 1.6
     [echo] **********************************************************
    [mkdir] Skipping D:\work\workspace\protegeserver4\org.protege.owl.server\build because it already exists.
    [mkdir] Skipping D:\work\workspace\protegeserver4\org.protege.owl.server\build\testng.classes because it already exists.
    [mkdir] Skipping D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes because it already exists.
    [mkdir] Skipping D:\work\workspace\protegeserver4\org.protege.owl.server\build\server because it already exists.
    [mkdir] Skipping D:\work\workspace\protegeserver4\org.protege.owl.server\build\server\bundles because it already exists.
[available] Unable to find dir ${env.BUNDLOR_HOME}

generate.src:
   [delete] Deleting directory D:\work\workspace\protegeserver4\org.protege.owl.server\build\src
   [delete] Deleting D:\work\workspace\protegeserver4\org.protege.owl.server\build\src\org\protege\owl\server\policy\generated\UsersAndGroups.tokens
   [delete] Deleting D:\work\workspace\protegeserver4\org.protege.owl.server\build\src\org\protege\owl\server\policy\generated\UsersAndGroupsLexer.java
   [delete] Deleting D:\work\workspace\protegeserver4\org.protege.owl.server\build\src\org\protege\owl\server\policy\generated\UsersAndGroupsParser.java
   [delete] Deleting directory D:\work\workspace\protegeserver4\org.protege.owl.server\build\src\org\protege\owl\server\policy\generated
   [delete] Deleting directory D:\work\workspace\protegeserver4\org.protege.owl.server\build\src\org\protege\owl\server\policy
   [delete] Deleting directory D:\work\workspace\protegeserver4\org.protege.owl.server\build\src\org\protege\owl\server
   [delete] Deleting directory D:\work\workspace\protegeserver4\org.protege.owl.server\build\src\org\protege\owl
   [delete] Deleting directory D:\work\workspace\protegeserver4\org.protege.owl.server\build\src\org\protege
   [delete] Deleting directory D:\work\workspace\protegeserver4\org.protege.owl.server\build\src\org
   [delete] Deleting directory D:\work\workspace\protegeserver4\org.protege.owl.server\build\src
    [mkdir] Created dir: D:\work\workspace\protegeserver4\org.protege.owl.server\build\src\org\protege\owl\server\policy\generated
     [java] Executing 'D:\work\Java\jdk1.6.0_30\jre\bin\java.exe' with arguments:
     [java] '-classpath'
     [java] 'D:\work\workspace\protegeserver4\org.protege.owl.server\lib\antlr-3.4-complete-no-antlrv2.jar'
     [java] 'org.antlr.Tool'
     [java] '-o'
     [java] 'D:\work\workspace\protegeserver4\org.protege.owl.server\build\src\org\protege\owl\server\policy\generated'
     [java] 'UsersAndGroups.g'
     [java] 
     [java] The ' characters around the executable and arguments are
     [java] not part of the command.
     [java] Executing 'D:\work\Java\jdk1.6.0_30\jre\bin\java.exe' with arguments:
     [java] '-classpath'
     [java] 'D:\work\workspace\protegeserver4\org.protege.owl.server\lib\antlr-3.4-complete-no-antlrv2.jar'
     [java] 'org.antlr.Tool'
     [java] '-o'
     [java] 'D:\work\workspace\protegeserver4\org.protege.owl.server\build\src\org\protege\owl\server\policy\generated'
     [java] 'Policy.g'
     [java] 
     [java] The ' characters around the executable and arguments are
     [java] not part of the command.

compile:
    [javac] org\protege\owl\server\Activator.java omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\org\protege\owl\server\Activator.class is up to date.
    [javac] org\protege\owl\server\api\AuthToken.java omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\org\protege\owl\server\api\AuthToken.class is up to date.
    [javac] org\protege\owl\server\api\Builder.java omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\org\protege\owl\server\api\Builder.class is up to date.
    [javac] org\protege\owl\server\api\ChangeHistory.java omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\org\protege\owl\server\api\ChangeHistory.class is up to date.
    [javac] org\protege\owl\server\api\ChangeMetaData.java omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\org\protege\owl\server\api\ChangeMetaData.class is up to date.
    [javac] org\protege\owl\server\api\Client.java omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\org\protege\owl\server\api\Client.class is up to date.
    [javac] org\protege\owl\server\api\ClientFactory.java omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\org\protege\owl\server\api\ClientFactory.class is up to date.
    [javac] org\protege\owl\server\api\DocumentFactory.java omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\org\protege\owl\server\api\DocumentFactory.class is up to date.
    [javac] org\protege\owl\server\api\OntologyDocumentRevision.java omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\org\protege\owl\server\api\OntologyDocumentRevision.class is up to date.
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    [javac] D:\work\workspace\protegeserver4\org.protege.owl.server\src\main\java\org\protege\owl\server\changes\format\DEPRECATED.TXT skipped - don't know how to handle it
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    [javac] org\protege\owl\server\policy\UserDatabase.java omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\org\protege\owl\server\policy\UserDatabase.class is up to date.
    [javac] org\protege\owl\server\render\DiffRenderer.java omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\org\protege\owl\server\render\DiffRenderer.class is up to date.
    [javac] org\protege\owl\server\render\DiffsByEntity.java omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\org\protege\owl\server\render\DiffsByEntity.class is up to date.
    [javac] org\protege\owl\server\render\GetAxiomSourceVisitor.java omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\org\protege\owl\server\render\GetAxiomSourceVisitor.class is up to date.
    [javac] org\protege\owl\server\render\RenderOntologyChangeVisitor.java omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\org\protege\owl\server\render\RenderOntologyChangeVisitor.class is up to date.
    [javac] org\protege\owl\server\util\AbstractClient.java omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\org\protege\owl\server\util\AbstractClient.class is up to date.
    [javac] org\protege\owl\server\util\ChangeNormalizer.java omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\org\protege\owl\server\util\ChangeNormalizer.class is up to date.
    [javac] org\protege\owl\server\util\ChangeUtilities.java omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\org\protege\owl\server\util\ChangeUtilities.class is up to date.
    [javac] org\protege\owl\server\util\ClientRegistry.java omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\org\protege\owl\server\util\ClientRegistry.class is up to date.
    [javac] org\protege\owl\server\util\ClientUtilities.java omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\org\protege\owl\server\util\ClientUtilities.class is up to date.
    [javac] org\protege\owl\server\util\CollectingChangeVisitor.java omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\org\protege\owl\server\util\CollectingChangeVisitor.class is up to date.
    [javac] org\protege\owl\server\util\GetUncommittedChangesVisitor.java omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\org\protege\owl\server\util\GetUncommittedChangesVisitor.class is up to date.
    [javac] org\protege\owl\server\util\InvertChangesVisitor.java omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\org\protege\owl\server\util\InvertChangesVisitor.class is up to date.
    [javac] org\protege\owl\server\util\LogChangesVisitor.java omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\org\protege\owl\server\util\LogChangesVisitor.class is up to date.
    [javac] org\protege\owl\server\util\OverlapVisitor.java omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\org\protege\owl\server\util\OverlapVisitor.class is up to date.
    [javac] org\protege\owl\server\util\ServerComponentFactoryAdapter.java omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\org\protege\owl\server\util\ServerComponentFactoryAdapter.class is up to date.
    [javac] org\protege\owl\server\util\ServerFilterAdapter.java omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\org\protege\owl\server\util\ServerFilterAdapter.class is up to date.
    [javac] D:\work\workspace\protegeserver4\org.protege.owl.server\build\src\org\protege\owl\server\policy\generated\Policy.tokens skipped - don't know how to handle it
    [javac] org\protege\owl\server\policy\generated\PolicyLexer.java added as org\protege\owl\server\policy\generated\PolicyLexer.class is outdated.
    [javac] org\protege\owl\server\policy\generated\PolicyParser.java added as org\protege\owl\server\policy\generated\PolicyParser.class is outdated.
    [javac] D:\work\workspace\protegeserver4\org.protege.owl.server\build\src\org\protege\owl\server\policy\generated\UsersAndGroups.tokens skipped - don't know how to handle it
    [javac] org\protege\owl\server\policy\generated\UsersAndGroupsLexer.java added as org\protege\owl\server\policy\generated\UsersAndGroupsLexer.class is outdated.
    [javac] org\protege\owl\server\policy\generated\UsersAndGroupsParser.java added as org\protege\owl\server\policy\generated\UsersAndGroupsParser.class is outdated.
    [javac] Compiling 4 source files to D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes
    [javac] Using modern compiler
    [javac] Compilation arguments:
    [javac] '-d'
    [javac] 'D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes'
    [javac] '-classpath'
    [javac] 'D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes;D:\work\workspace\protegeserver4\org.protege.owl.server\etc\server.template\lib\felix.jar;D:\work\workspace\protegeserver4\org.protege.owl.server\etc\server.template\bundles\org.semanticweb.owl.owlapi.jar;D:\work\workspace\protegeserver4\org.protege.owl.server\lib\antlr-3.4-complete-no-antlrv2.jar;D:\work\workspace\protegeserver4\org.protege.owl.server\etc\server.template\lib\commons-cli-1.2.jar'
    [javac] '-sourcepath'
    [javac] 'D:\work\workspace\protegeserver4\org.protege.owl.server\src\main\java;D:\work\workspace\protegeserver4\org.protege.owl.server\build\src'
    [javac] '-g'
    [javac] 
    [javac] The ' characters around the executable and arguments are
    [javac] not part of the command.
    [javac] Files to be compiled:
    [javac]     D:\work\workspace\protegeserver4\org.protege.owl.server\build\src\org\protege\owl\server\policy\generated\PolicyLexer.java
    [javac]     D:\work\workspace\protegeserver4\org.protege.owl.server\build\src\org\protege\owl\server\policy\generated\PolicyParser.java
    [javac]     D:\work\workspace\protegeserver4\org.protege.owl.server\build\src\org\protege\owl\server\policy\generated\UsersAndGroupsLexer.java
    [javac]     D:\work\workspace\protegeserver4\org.protege.owl.server\build\src\org\protege\owl\server\policy\generated\UsersAndGroupsParser.java
     [rmic] org\protege\owl\server\connect\rmi\RemoteServerImpl.class omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\org\protege\owl\server\connect\rmi\RemoteServerImpl_Stub.class;D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\org\protege\owl\server\connect\rmi\RemoteServerImpl_Skel.class are  up to date.
     [copy] antlr-3.4-complete-no-antlrv2.jar omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\lib\antlr-3.4-complete-no-antlrv2.jar is up to date.
     [copy] No sources found.

use.existing.manifest:
     [copy] Copying 1 file to D:\work\workspace\protegeserver4\org.protege.owl.server\build
     [copy] Copying D:\work\workspace\protegeserver4\org.protege.owl.server\META-INF\MANIFEST.MF to D:\work\workspace\protegeserver4\org.protege.owl.server\build\manifest.mf

bundlor.manifest:
Skipped because property 'use.bundlor' not set.

copy.resources:
     [copy] builder.xml omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\OSGI-INF\builder.xml is up to date.
     [copy] conflict-factory.xml omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\OSGI-INF\conflict-factory.xml is up to date.
     [copy] osgi-factory.xml omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\OSGI-INF\osgi-factory.xml is up to date.
     [copy] policy-factory.xml omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\OSGI-INF\policy-factory.xml is up to date.
     [copy] rmi-factory.xml omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\OSGI-INF\rmi-factory.xml is up to date.
     [copy] server-factory.xml omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\OSGI-INF\server-factory.xml is up to date.
     [copy] No sources found.
     [copy] metaproject.owl omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\classes\metaproject.owl is up to date.
     [copy] No sources found.

setup.server.framework:
    [mkdir] Skipping D:\work\workspace\protegeserver4\org.protege.owl.server\build\server because it already exists.
     [copy] bundles\org.apache.felix.configadmin.jar omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\server\bundles\org.apache.felix.configadmin.jar is up to date.
     [copy] bundles\org.apache.felix.scr.jar omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\server\bundles\org.apache.felix.scr.jar is up to date.
     [copy] bundles\org.semanticweb.owl.owlapi.jar omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\server\bundles\org.semanticweb.owl.owlapi.jar is up to date.
     [copy] config.xml omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\server\config.xml is up to date.
     [copy] configuration\UsersAndGroups omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\server\configuration\UsersAndGroups is up to date.
     [copy] lib\ProtegeLauncher.jar omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\server\lib\ProtegeLauncher.jar is up to date.
     [copy] lib\commons-cli-1.2.jar omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\server\lib\commons-cli-1.2.jar is up to date.
     [copy] lib\dev-tools.jar omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\server\lib\dev-tools.jar is up to date.
     [copy] lib\felix.jar omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\server\lib\felix.jar is up to date.
     [copy] metaproject.owl omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\server\metaproject.owl is up to date.
     [copy] run.sh omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\server\run.sh is up to date.
     [copy]  omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\server is up to date.
     [copy] bin omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\server\bin is up to date.
     [copy] bundles omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\server\bundles is up to date.
     [copy] configuration omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\server\configuration is up to date.
     [copy] lib omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\server\lib is up to date.
     [copy] root omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\server\root is up to date.
     [copy] D:\work\workspace\protegeserver4\org.protege.owl.server\logging.properties omitted as D:\work\workspace\protegeserver4\org.protege.owl.server\build\server\logging.properties is up to date.

jar:
      [jar] Updating jar since jar manifest has changed
      [jar] Building jar: D:\work\workspace\protegeserver4\org.protege.owl.server\build\server\bundles\org.protege.owl.server.jar
      [jar] adding directory META-INF/
      [jar] adding entry META-INF/MANIFEST.MF
      [jar] adding directory OSGI-INF/
      [jar] adding directory lib/
      [jar] adding directory org/
      [jar] adding directory org/protege/
      [jar] adding directory org/protege/owl/
      [jar] adding directory org/protege/owl/server/
      [jar] adding directory org/protege/owl/server/api/
      [jar] adding directory org/protege/owl/server/api/exception/
      [jar] adding directory org/protege/owl/server/changes/
      [jar] adding directory org/protege/owl/server/changes/format/
      [jar] adding directory org/protege/owl/server/command/
      [jar] adding directory org/protege/owl/server/configuration/
      [jar] adding directory org/protege/owl/server/configuration/factories/
      [jar] adding directory org/protege/owl/server/conflict/
      [jar] adding directory org/protege/owl/server/connect/
      [jar] adding directory org/protege/owl/server/connect/local/
      [jar] adding directory org/protege/owl/server/connect/rmi/
      [jar] adding directory org/protege/owl/server/core/
      [jar] adding directory org/protege/owl/server/osgi/
      [jar] adding directory org/protege/owl/server/policy/
      [jar] adding directory org/protege/owl/server/policy/generated/
      [jar] adding directory org/protege/owl/server/render/
      [jar] adding directory org/protege/owl/server/util/
      [jar] adding entry OSGI-INF/builder.xml
      [jar] adding entry OSGI-INF/conflict-factory.xml
      [jar] adding entry OSGI-INF/osgi-factory.xml
      [jar] adding entry OSGI-INF/policy-factory.xml
      [jar] adding entry OSGI-INF/rmi-factory.xml
      [jar] adding entry OSGI-INF/server-factory.xml
      [jar] adding entry lib/antlr-3.4-complete-no-antlrv2.jar
      [jar] adding entry metaproject.owl
      [jar] adding entry org/protege/owl/server/Activator$1.class
      [jar] adding entry org/protege/owl/server/Activator.class
      [jar] adding entry org/protege/owl/server/api/AuthToken.class
      [jar] adding entry org/protege/owl/server/api/Builder.class
      [jar] adding entry org/protege/owl/server/api/ChangeHistory.class
      [jar] adding entry org/protege/owl/server/api/ChangeMetaData.class
      [jar] adding entry org/protege/owl/server/api/Client.class
      [jar] adding entry org/protege/owl/server/api/ClientFactory.class
      [jar] adding entry org/protege/owl/server/api/DocumentFactory.class
      [jar] adding entry org/protege/owl/server/api/OntologyDocumentRevision.class
      [jar] adding entry org/protege/owl/server/api/RemoteOntologyDocument.class
      [jar] adding entry org/protege/owl/server/api/RemoteServerDirectory.class
      [jar] adding entry org/protege/owl/server/api/RemoteServerDocument.class
      [jar] adding entry org/protege/owl/server/api/RevisionPointer$1.class
      [jar] adding entry org/protege/owl/server/api/RevisionPointer$RevisionPointerType.class
      [jar] adding entry org/protege/owl/server/api/RevisionPointer.class
      [jar] adding entry org/protege/owl/server/api/Server.class
      [jar] adding entry org/protege/owl/server/api/ServerComponentFactory.class
      [jar] adding entry org/protege/owl/server/api/ServerConfiguration.class
      [jar] adding entry org/protege/owl/server/api/ServerDirectory.class
      [jar] adding entry org/protege/owl/server/api/ServerDocument.class
      [jar] adding entry org/protege/owl/server/api/ServerExports.class
      [jar] adding entry org/protege/owl/server/api/ServerFilter.class
      [jar] adding entry org/protege/owl/server/api/ServerInternals.class
      [jar] adding entry org/protege/owl/server/api/ServerListener.class
      [jar] adding entry org/protege/owl/server/api/ServerManager.class
      [jar] adding entry org/protege/owl/server/api/ServerOntologyDocument.class
      [jar] adding entry org/protege/owl/server/api/ServerPath.class
      [jar] adding entry org/protege/owl/server/api/ServerTransport.class
      [jar] adding entry org/protege/owl/server/api/SingletonChangeHistory.class
      [jar] adding entry org/protege/owl/server/api/UserId.class
      [jar] adding entry org/protege/owl/server/api/VersionedOntologyDocument.class
      [jar] adding entry org/protege/owl/server/api/exception/AuthenticationFailedException.class
      [jar] adding entry org/protege/owl/server/api/exception/AuthorizationFailedException.class
      [jar] adding entry org/protege/owl/server/api/exception/ConflictException.class
      [jar] adding entry org/protege/owl/server/api/exception/DocumentAlreadyExistsException.class
      [jar] adding entry org/protege/owl/server/api/exception/DocumentHasWrongTypeException.class
      [jar] adding entry org/protege/owl/server/api/exception/DocumentNotFoundException.class
      [jar] adding entry org/protege/owl/server/api/exception/NonWritableBackingStore.class
      [jar] adding entry org/protege/owl/server/api/exception/OWLServerException.class
      [jar] adding entry org/protege/owl/server/api/exception/RuntimeIOException.class
      [jar] adding entry org/protege/owl/server/api/exception/RuntimeOWLServerException.class
      [jar] adding entry org/protege/owl/server/api/exception/UserDeclinedAuthenticationException.class
      [jar] adding entry org/protege/owl/server/changes/BackgroundLoadChangeHistory$1.class
      [jar] adding entry org/protege/owl/server/changes/BackgroundLoadChangeHistory$BackGroundLoader.class
      [jar] adding entry org/protege/owl/server/changes/BackgroundLoadChangeHistory.class
      [jar] adding entry org/protege/owl/server/changes/ChangeHistoryImpl.class
      [jar] adding entry org/protege/owl/server/changes/ChangeHistoryUtilities.class
      [jar] adding entry org/protege/owl/server/changes/CongestionLogger.class
      [jar] adding entry org/protege/owl/server/changes/CongestionLoggerInputStream.class
      [jar] adding entry org/protege/owl/server/changes/CongestionLoggerOutputStream.class
      [jar] adding entry org/protege/owl/server/changes/DocumentFactoryImpl.class
      [jar] adding entry org/protege/owl/server/changes/ReplaceChangedOntologyVisitor.class
      [jar] adding entry org/protege/owl/server/changes/SingletonChangeHistoryImpl.class
      [jar] adding entry org/protege/owl/server/changes/VersionedOntologyDocumentImpl.class
      [jar] adding entry org/protege/owl/server/changes/format/IOUtils.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLInputStream.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$1.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$10.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$11.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$12.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$13.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$14.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$15.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$16.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$17.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$18.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$19.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$2.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$20.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$21.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$22.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$23.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$24.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$25.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$26.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$27.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$28.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$29.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$3.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$30.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$31.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$32.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$33.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$34.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$35.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$36.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$37.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$38.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$39.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$4.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$40.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$41.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$42.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$43.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$44.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$45.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$46.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$47.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$48.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$49.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$5.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$50.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$51.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$52.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$53.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$54.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$55.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$56.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$57.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$58.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$59.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$6.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$60.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$61.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$62.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$63.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$64.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$65.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$66.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$67.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$68.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$69.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$7.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$70.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$71.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$72.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$73.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$74.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$75.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$76.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$77.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$78.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$79.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$8.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$80.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$81.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$82.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$83.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$84.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$85.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$86.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$87.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$88.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$89.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$9.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$90.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$91.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$92.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$93.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$94.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$95.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType$96.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLObjectType.class
      [jar] adding entry org/protege/owl/server/changes/format/OWLOutputStream.class
      [jar] adding entry org/protege/owl/server/changes/format/ReplaceChangedOntologyVisitor.class
      [jar] adding entry org/protege/owl/server/changes/format/SerializingVisitor.class
      [jar] adding entry org/protege/owl/server/command/CRMIClientFactory.class
      [jar] adding entry org/protege/owl/server/command/Checkout.class
      [jar] adding entry org/protege/owl/server/command/Commit.class
      [jar] adding entry org/protege/owl/server/command/ListDirectory.class
      [jar] adding entry org/protege/owl/server/command/Log.class
      [jar] adding entry org/protege/owl/server/command/P4OWLServerOptions.class
      [jar] adding entry org/protege/owl/server/command/ServerCommand.class
      [jar] adding entry org/protege/owl/server/command/SetMetaProjectPort.class
      [jar] adding entry org/protege/owl/server/command/SetMetaprojectDataDir.class
      [jar] adding entry org/protege/owl/server/command/Status.class
      [jar] adding entry org/protege/owl/server/command/Uncommitted.class
      [jar] adding entry org/protege/owl/server/command/Update.class
      [jar] adding entry org/protege/owl/server/configuration/BuilderImpl.class
      [jar] adding entry org/protege/owl/server/configuration/FilterConstraint.class
      [jar] adding entry org/protege/owl/server/configuration/MetaprojectVocabulary.class
      [jar] adding entry org/protege/owl/server/configuration/ServerConstraints.class
      [jar] adding entry org/protege/owl/server/configuration/TransportConstraints.class
      [jar] adding entry org/protege/owl/server/configuration/factories/ConflictManagerFactory.class
      [jar] adding entry org/protege/owl/server/configuration/factories/CoreServerFactory.class
      [jar] adding entry org/protege/owl/server/configuration/factories/PluginInfrastructureFactory.class
      [jar] adding entry org/protege/owl/server/configuration/factories/PolicyComponentFactory.class
      [jar] adding entry org/protege/owl/server/configuration/factories/RMIConnectionFactory.class
      [jar] adding entry org/protege/owl/server/conflict/ConflictManager.class
      [jar] adding entry org/protege/owl/server/connect/ConfigurableCompression.class
      [jar] adding entry org/protege/owl/server/connect/RootUtils.class
      [jar] adding entry org/protege/owl/server/connect/local/LocalClient.class
      [jar] adding entry org/protege/owl/server/connect/local/LocalTransport.class
      [jar] adding entry org/protege/owl/server/connect/local/LocalTransportImpl.class
      [jar] adding entry org/protege/owl/server/connect/local/OSGiLocalTransport.class
      [jar] adding entry org/protege/owl/server/connect/rmi/AbstractRMIClientFactory.class
      [jar] adding entry org/protege/owl/server/connect/rmi/RMIClient.class
      [jar] adding entry org/protege/owl/server/connect/rmi/RMITransport.class
      [jar] adding entry org/protege/owl/server/connect/rmi/RemoteServer.class
      [jar] adding entry org/protege/owl/server/connect/rmi/RemoteServerImpl.class
      [jar] adding entry org/protege/owl/server/connect/rmi/RemoteServerImpl_Skel.class
      [jar] adding entry org/protege/owl/server/connect/rmi/RemoteServerImpl_Stub.class
      [jar] adding entry org/protege/owl/server/core/ChangeDocumentPool$1.class
      [jar] adding entry org/protege/owl/server/core/ChangeDocumentPool$2.class
      [jar] adding entry org/protege/owl/server/core/ChangeDocumentPool.class
      [jar] adding entry org/protege/owl/server/core/ChangeDocumentPoolEntry$1.class
      [jar] adding entry org/protege/owl/server/core/ChangeDocumentPoolEntry$ReadChangeDocument.class
      [jar] adding entry org/protege/owl/server/core/ChangeDocumentPoolEntry$WriteChanges.class
      [jar] adding entry org/protege/owl/server/core/ChangeDocumentPoolEntry.class
      [jar] adding entry org/protege/owl/server/core/DocumentPropertiesFilter.class
      [jar] adding entry org/protege/owl/server/core/ServerDirectoryImpl$1.class
      [jar] adding entry org/protege/owl/server/core/ServerDirectoryImpl.class
      [jar] adding entry org/protege/owl/server/core/ServerDocumentImpl.class
      [jar] adding entry org/protege/owl/server/core/ServerImpl$1.class
      [jar] adding entry org/protege/owl/server/core/ServerImpl$2.class
      [jar] adding entry org/protege/owl/server/core/ServerImpl$ServerObjectStatus$1.class
      [jar] adding entry org/protege/owl/server/core/ServerImpl$ServerObjectStatus$2.class
      [jar] adding entry org/protege/owl/server/core/ServerImpl$ServerObjectStatus$3.class
      [jar] adding entry org/protege/owl/server/core/ServerImpl$ServerObjectStatus$4.class
      [jar] adding entry org/protege/owl/server/core/ServerImpl$ServerObjectStatus$5.class
      [jar] adding entry org/protege/owl/server/core/ServerImpl$ServerObjectStatus.class
      [jar] adding entry org/protege/owl/server/core/ServerImpl.class
      [jar] adding entry org/protege/owl/server/core/ServerOntologyDocumentImpl$RemoteOntologyDocumentImpl.class
      [jar] adding entry org/protege/owl/server/core/ServerOntologyDocumentImpl.class
      [jar] adding entry org/protege/owl/server/core/SynchronizationFilter.class
      [jar] adding entry org/protege/owl/server/osgi/OSGiAware.class
      [jar] adding entry org/protege/owl/server/osgi/OSGiShutdownFilter.class
      [jar] adding entry org/protege/owl/server/policy/Authenticator$GetUserAndGroupOption.class
      [jar] adding entry org/protege/owl/server/policy/Authenticator.class
      [jar] adding entry org/protege/owl/server/policy/BasicLoginService.class
      [jar] adding entry org/protege/owl/server/policy/Group.class
      [jar] adding entry org/protege/owl/server/policy/LoginService.class
      [jar] adding entry org/protege/owl/server/policy/Operation.class
      [jar] adding entry org/protege/owl/server/policy/Permission.class
      [jar] adding entry org/protege/owl/server/policy/Policy.class
      [jar] adding entry org/protege/owl/server/policy/PolicyFilter.class
      [jar] adding entry org/protege/owl/server/policy/ProtectedEnumeratedObjects.class
      [jar] adding entry org/protege/owl/server/policy/ProtectedObject.class
      [jar] adding entry org/protege/owl/server/policy/ProtectedServerDocument.class
      [jar] adding entry org/protege/owl/server/policy/RMILoginUtility.class
      [jar] adding entry org/protege/owl/server/policy/SimpleAuthToken.class
      [jar] adding entry org/protege/owl/server/policy/UnauthorizedToken.class
      [jar] adding entry org/protege/owl/server/policy/UserContainer$1.class
      [jar] adding entry org/protege/owl/server/policy/UserContainer.class
      [jar] adding entry org/protege/owl/server/policy/UserContainerImpl.class
      [jar] adding entry org/protege/owl/server/policy/UserDatabase.class
      [jar] adding entry org/protege/owl/server/policy/generated/PolicyLexer$DFA6.class
      [jar] adding entry org/protege/owl/server/policy/generated/PolicyLexer.class
      [jar] adding entry org/protege/owl/server/policy/generated/PolicyParser.class
      [jar] adding entry org/protege/owl/server/policy/generated/UsersAndGroupsLexer$DFA6.class
      [jar] adding entry org/protege/owl/server/policy/generated/UsersAndGroupsLexer.class
      [jar] adding entry org/protege/owl/server/policy/generated/UsersAndGroupsParser.class
      [jar] adding entry org/protege/owl/server/render/DiffRenderer.class
      [jar] adding entry org/protege/owl/server/render/DiffsByEntity.class
      [jar] adding entry org/protege/owl/server/render/GetAxiomSourceVisitor.class
      [jar] adding entry org/protege/owl/server/render/RenderOntologyChangeVisitor.class
      [jar] adding entry org/protege/owl/server/util/AbstractClient.class
      [jar] adding entry org/protege/owl/server/util/ChangeNormalizer.class
      [jar] adding entry org/protege/owl/server/util/ChangeUtilities.class
      [jar] adding entry org/protege/owl/server/util/ClientRegistry.class
      [jar] adding entry org/protege/owl/server/util/ClientUtilities.class
      [jar] adding entry org/protege/owl/server/util/CollectingChangeVisitor.class
      [jar] adding entry org/protege/owl/server/util/GetUncommittedChangesVisitor$1.class
      [jar] adding entry org/protege/owl/server/util/GetUncommittedChangesVisitor$OntologyChangeType.class
      [jar] adding entry org/protege/owl/server/util/GetUncommittedChangesVisitor.class
      [jar] adding entry org/protege/owl/server/util/InvertChangesVisitor.class
      [jar] adding entry org/protege/owl/server/util/LogChangesVisitor.class
      [jar] adding entry org/protege/owl/server/util/OverlapVisitor.class
      [jar] adding entry org/protege/owl/server/util/ServerComponentFactoryAdapter.class
      [jar] adding entry org/protege/owl/server/util/ServerFilterAdapter.class
      [jar] No Implementation-Title set.No Implementation-Version set.No Implementation-Vendor set.
      [jar] Location: D:\work\workspace\protegeserver4\org.protege.owl.server\build.xml:166: 
      [ant] Exiting D:\work\workspace\protegeserver4\org.protege.owl.server\build.xml.

deploy:
     [echo] ----------------------------------------Deployer
Project base dir set to: D:\work\workspace\protegeserver4\org.protege.owl.server.deploy
      [ant] calling target(s) [deploy] in build file D:\work\workspace\protegeserver4\org.protege.owl.server.deploy\build.xml
parsing buildfile D:\work\workspace\protegeserver4\org.protege.owl.server.deploy\build.xml with URI = file:/D:/work/workspace/protegeserver4/org.protege.owl.server.deploy/build.xml
Project base dir set to: D:\work\workspace\protegeserver4\org.protege.owl.server.deploy
 [property] Loading D:\work\workspace\protegeserver4\org.protege.owl.server.deploy\local.properties
Override ignored for property "hostname"
Override ignored for property "sandbox.user"
Override ignored for property "memory.mb"
Override ignored for property "memory.mb"
Override ignored for property "build"
      [ant] Entering D:\work\workspace\protegeserver4\org.protege.owl.server.deploy\build.xml...
Build sequence for target(s) `deploy' is [detect.os, configure.windows.directories, configure.osx.directories, configure.unix.directories, configure.directories, check.unsupported, init, setup.classpath, compile, jar, install.noarch.files, install.windows32.files, install.windows64.files, install.windows.files, configure.metaproject, deploy.windows, copy.unix.scripts, install.osx.files, deploy.osx, install.unix.files, deploy.unix, deploy]
Complete build sequence is [detect.os, configure.windows.directories, configure.osx.directories, configure.unix.directories, configure.directories, check.unsupported, init, setup.classpath, compile, jar, install.noarch.files, install.windows32.files, install.windows64.files, install.windows.files, configure.metaproject, deploy.windows, copy.unix.scripts, install.osx.files, deploy.osx, install.unix.files, deploy.unix, deploy, undeploy.windows, undeploy.osx, undeploy.unix, undeploy, clean, clean.full, install, ]

detect.os:

configure.windows.directories:

configure.osx.directories:
Skipped because property 'is.osx' not set.

configure.unix.directories:
Skipped because property 'is.unix' not set.

configure.directories:

check.unsupported:
Skipped because property 'is.unsupported' not set.

init:
    [mkdir] Skipping D:\work\workspace\protegeserver4\org.protege.owl.server.deploy\build\classes because it already exists.

setup.classpath:
[check.dependencies] Protege dependencies configured.

compile:
    [javac] org\protege\owl\server\deploy\windows\WindowsOWLServer.java omitted as D:\work\workspace\protegeserver4\org.protege.owl.server.deploy\build\classes\org\protege\owl\server\deploy\windows\WindowsOWLServer.class is up to date.

jar:
      [jar] org\protege\owl\server\deploy\windows\WindowsOWLServer.class omitted as D:\work\workspace\protegeserver4\org.protege.owl.server.deploy\build\winsvc.jar:org/protege/owl/server/deploy/windows/WindowsOWLServer.class is up to date.
      [jar] org omitted as D:\work\workspace\protegeserver4\org.protege.owl.server.deploy\build\winsvc.jar:org/ is up to date.
      [jar] org\protege omitted as D:\work\workspace\protegeserver4\org.protege.owl.server.deploy\build\winsvc.jar:org/protege/ is up to date.
      [jar] org\protege\owl omitted as D:\work\workspace\protegeserver4\org.protege.owl.server.deploy\build\winsvc.jar:org/protege/owl/ is up to date.
      [jar] org\protege\owl\server omitted as D:\work\workspace\protegeserver4\org.protege.owl.server.deploy\build\winsvc.jar:org/protege/owl/server/ is up to date.
      [jar] org\protege\owl\server\deploy omitted as D:\work\workspace\protegeserver4\org.protege.owl.server.deploy\build\winsvc.jar:org/protege/owl/server/deploy/ is up to date.
      [jar] org\protege\owl\server\deploy\windows omitted as D:\work\workspace\protegeserver4\org.protege.owl.server.deploy\build\winsvc.jar:org/protege/owl/server/deploy/windows/ is up to date.
      [jar] No Implementation-Title set.No Implementation-Version set.No Implementation-Vendor set.
      [jar] Location: D:\work\workspace\protegeserver4\org.protege.owl.server.deploy\build.xml:265: 

install.noarch.files:
     [echo] install no archieve files :C:\Program Files\Protege OWL Server
    [mkdir] Skipping C:\Program Files\Protege OWL Server because it already exists.
     [copy] bundles\org.apache.felix.configadmin.jar omitted as C:\Program Files\Protege OWL Server\bundles\org.apache.felix.configadmin.jar is up to date.
     [copy] bundles\org.apache.felix.scr.jar omitted as C:\Program Files\Protege OWL Server\bundles\org.apache.felix.scr.jar is up to date.
     [copy] bundles\org.protege.owl.server.jar added as bundles\org.protege.owl.server.jar is outdated.
     [copy] bundles\org.semanticweb.owl.owlapi.jar omitted as C:\Program Files\Protege OWL Server\bundles\org.semanticweb.owl.owlapi.jar is up to date.
     [copy] config.xml omitted as C:\Program Files\Protege OWL Server\config.xml is up to date.
     [copy] configuration\UsersAndGroups omitted as C:\Program Files\Protege OWL Server\configuration\UsersAndGroups is up to date.
     [copy] lib\ProtegeLauncher.jar omitted as C:\Program Files\Protege OWL Server\lib\ProtegeLauncher.jar is up to date.
     [copy] lib\commons-cli-1.2.jar omitted as C:\Program Files\Protege OWL Server\lib\commons-cli-1.2.jar is up to date.
     [copy] lib\dev-tools.jar omitted as C:\Program Files\Protege OWL Server\lib\dev-tools.jar is up to date.
     [copy] lib\felix.jar omitted as C:\Program Files\Protege OWL Server\lib\felix.jar is up to date.
     [copy] logging.properties omitted as C:\Program Files\Protege OWL Server\logging.properties is up to date.
     [copy] metaproject.owl omitted as C:\Program Files\Protege OWL Server\metaproject.owl is up to date.
     [copy] run.sh omitted as C:\Program Files\Protege OWL Server\run.sh is up to date.
     [copy]  omitted as C:\Program Files\Protege OWL Server is up to date.
     [copy] bin added as bin is outdated.
     [copy] bundles added as bundles is outdated.
     [copy] configuration added as configuration is outdated.
     [copy] lib added as lib is outdated.
     [copy] root added as root is outdated.
     [copy] Copying 1 file to C:\Program Files\Protege OWL Server
     [copy] Copying D:\work\workspace\protegeserver4\org.protege.owl.server\build\server\bundles\org.protege.owl.server.jar to C:\Program Files\Protege OWL Server\bundles\org.protege.owl.server.jar
     [copy] Copying 1 file to C:\Program Files\Protege OWL Server
     [copy] Copying D:\work\workspace\protegeserver4\org.protege.owl.server.deploy\logging.properties to C:\Program Files\Protege OWL Server\logging.properties
  [replace] Replacing in C:\Program Files\Protege OWL Server\logging.properties: @log.prefix@ --> C:/Program Files/Protege OWL Server/logs
    [mkdir] Skipping C:\Program Files\Protege OWL Server\ontologies because it already exists.
    [mkdir] Skipping C:\Program Files\Protege OWL Server\logs because it already exists.

install.windows32.files:
     [copy] D:\work\workspace\protegeserver4\org.protege.owl.server.deploy\apache-commons-daemon\prunsrv.exe omitted as C:\Program Files\Protege OWL Server\bin\OWLDocService.exe is up to date.

install.windows64.files:
Skipped because property 'is.windows64' not set.

install.windows.files:
     [copy] D:\work\workspace\protegeserver4\org.protege.owl.server.deploy\build\winsvc.jar omitted as C:\Program Files\Protege OWL Server\bin\winsvc.jar is up to date.
     [copy] D:\work\workspace\protegeserver4\org.protege.owl.server.deploy\apache-commons-daemon\prunmgr.exe omitted as C:\Program Files\Protege OWL Server\bin\OWLServiceManager.exe is up to date.

configure.metaproject:
     [java] Executing 'D:\work\Java\jdk1.6.0_30\jre\bin\java.exe' with arguments:
     [java] '-classpath'
     [java] 'D:\work\workspace\protegeserver4\org.protege.owl.server\build\server\lib\felix.jar;D:\work\workspace\protegeserver4\org.protege.owl.server\build\server\lib\ProtegeLauncher.jar;D:\work\workspace\protegeserver4\org.protege.owl.server\build\server\bundles\org.semanticweb.owl.owlapi.jar;D:\work\workspace\protegeserver4\org.protege.owl.server\build\server\bundles\org.protege.owl.server.jar'
     [java] 'org.protege.owl.server.command.SetMetaprojectDataDir'
     [java] 'C:\Program Files\Protege OWL Server/metaproject.owl'
     [java] 'C:\Program Files\Protege OWL Server/ontologies'
     [java] 
     [java] The ' characters around the executable and arguments are
     [java] not part of the command.
     [java] Nov 6, 2012 12:55:51 PM org.protege.owl.server.command.SetMetaprojectDataDir main
     [java] INFO: Set data directory to C:\Program Files\Protege OWL Server/ontologies
     [java] Executing 'D:\work\Java\jdk1.6.0_30\jre\bin\java.exe' with arguments:
     [java] '-classpath'
     [java] 'D:\work\workspace\protegeserver4\org.protege.owl.server\build\server\lib\felix.jar;D:\work\workspace\protegeserver4\org.protege.owl.server\build\server\lib\ProtegeLauncher.jar;D:\work\workspace\protegeserver4\org.protege.owl.server\build\server\bundles\org.semanticweb.owl.owlapi.jar;D:\work\workspace\protegeserver4\org.protege.owl.server\build\server\bundles\org.protege.owl.server.jar'
     [java] 'org.protege.owl.server.command.SetMetaProjectPort'
     [java] 'C:\Program Files\Protege OWL Server/metaproject.owl'
     [java] '4875'
     [java] 
     [java] The ' characters around the executable and arguments are
     [java] not part of the command.
     [java] Nov 6, 2012 12:55:52 PM org.protege.owl.server.command.SetMetaProjectPort main
     [java] INFO: Port set to 4875

deploy.windows:
     [echo] Deploying windows Protege OWL Server
     [echo] Will run as protege : C:/Program Files/Protege OWL Server/logs
     [exec] Current OS is Windows 7
     [exec] Executing 'C:\Program Files\Protege OWL Server\bin\OWLDocService.exe' with arguments:
     [exec] '//IS//OWLServer'
     [exec] '--Install=C:\Program Files\Protege OWL Server\bin\OWLDocService.exe'
     [exec] '--Jvm=auto'
     [exec] '--Description=Protege-OWL-Document-Service'
     [exec] '--DisplayName=OWLServer'
     [exec] '--LogPath=C:/Program Files/Protege OWL Server/logs'
     [exec] '--StdOutput=auto'
     [exec] '--StdError=auto'
     [exec] '--Startup=auto'
     [exec] '--Classpath=bin/winsvc.jar;lib/felix.jar;lib/ProtegeLauncher.jar'
     [exec] '--JvmMx=700'
     [exec] '++JvmOptions=-DentityExpansionLimit=100000000'
     [exec] '++JvmOptions=-Dfile.encoding=UTF-8'
     [exec] '++JvmOptions=-Djava.rmi.server.hostname=dinu'
     [exec] '++JvmOptions=-Dorg.protege.owl.server.configuration=metaproject.owl'
     [exec] '++JvmOptions=-Djava.util.logging.config.file=logging.properties'
     [exec] '--StartPath=C:\Program Files\Protege OWL Server'
     [exec] '--StartMode=jvm'
     [exec] '--StartClass=org.protege.owl.server.deploy.windows.WindowsOWLServer'
     [exec] '--StartParams=start'
     [exec] '--StopPath=C:\Program Files\Protege OWL Server'
     [exec] '--StopMode=jvm'
     [exec] '--StopClass=org.protege.owl.server.deploy.windows.WindowsOWLServer'
     [exec] '--StopParams=stop'
     [exec] 
     [exec] The ' characters around the executable and arguments are
     [exec] not part of the command.
     [echo] prefix C:\Program Files\Protege OWL Server\bin\OWLDocService.exe
     [exec] Current OS is Windows 7
     [exec] Executing 'C:\Program Files\Protege OWL Server\bin\OWLDocService.exe' with arguments:
     [exec] '//ES//OWLServer'
     [exec] 
     [exec] The ' characters around the executable and arguments are
     [exec] not part of the command.
      [ant] Exiting D:\work\workspace\protegeserver4\org.protege.owl.server.deploy\build.xml.

BUILD FAILED
D:\work\workspace\protegeserver4\build.xml:35: The following error occurred while executing this line:
D:\work\workspace\protegeserver4\org.protege.owl.server.deploy\build.xml:339: exec returned: 5
	at org.apache.tools.ant.taskdefs.ExecTask.runExecute(ExecTask.java:646)
	at org.apache.tools.ant.taskdefs.ExecTask.runExec(ExecTask.java:672)
	at org.apache.tools.ant.taskdefs.ExecTask.execute(ExecTask.java:498)
	at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:291)
	at sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106)
	at org.apache.tools.ant.Task.perform(Task.java:348)
	at org.apache.tools.ant.Target.execute(Target.java:392)
	at org.apache.tools.ant.Target.performTasks(Target.java:413)
	at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1399)
	at org.apache.tools.ant.helper.SingleCheckExecutor.executeTargets(SingleCheckExecutor.java:38)
	at org.apache.tools.ant.Project.executeTargets(Project.java:1251)
	at org.apache.tools.ant.taskdefs.Ant.execute(Ant.java:442)
	at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:291)
	at sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106)
	at org.apache.tools.ant.Task.perform(Task.java:348)
	at org.apache.tools.ant.Target.execute(Target.java:392)
	at org.apache.tools.ant.Target.performTasks(Target.java:413)
	at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1399)
	at org.apache.tools.ant.Project.executeTarget(Project.java:1368)
	at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:41)
	at org.apache.tools.ant.Project.executeTargets(Project.java:1251)
	at org.apache.tools.ant.Main.runBuild(Main.java:811)
	at org.apache.tools.ant.Main.startAnt(Main.java:217)
	at org.apache.tools.ant.launch.Launcher.run(Launcher.java:280)
	at org.apache.tools.ant.launch.Launcher.main(Launcher.java:109)

Total time: 7 seconds