Pellet Reasoner 1.5.2 in Protege 3.5

Mahmood2.Ahmad <[email protected]> Thu, 19 Dec 2013 13:18:31 +0000
Newsgroups gmane.comp.misc.ontology.protege.owl,gmane.comp.misc.ontology.protege.general
Message-ID <7a7ffe2853bd43f88b8a3a119723f629@AM3PR07MB257.eurprd07.prod.outlook.com>
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Dear colleagues,

[A copy of this message is set to each forum at [email protected].=
edu<mailto:[email protected]> and [email protected]=
nford.edu<mailto:[email protected]> .... apologies for =
cross posting].

I am seeking help on the problem of Pellet reasoner 1.5.2 in Prot?g? 3.5 al=
pha on my windows 8 PC laptop which has 8GB RAM. After looking at discussio=
ns at this prestigious forum, I have set the maximum memory field in prot?g=
?.lax file as 3GB for the prot?g? launching indicates that the maximum is s=
et at 1871 MB.

I have the following ontologies imported in my prot?g? project:

1) Ontology P2 that further imports ontology P1 which further imports ontol=
ogies A and B
2) Ontology P4 that imports ontology P3
3) Ontology P5

As soon as I have imported the ontologies, Pellet reasoner 1.5.2 performs t=
he consistency check which is successful.

The problem of 'out of memory' starts when I add more than one individuals =
to a concept. The reasoner simply goes out of memory on adding more than on=
e concept.

Is this expected? What does this indicate? Could you please help me on reso=
lving this problem as I need to infer some SWRL rules on about 100 individu=
als?

Very grateful and with regards,

Mahmood Ahmad
(PhD student)

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<div style=3D"margin-top: 0px; margin-bottom: 0px;">Dear colleagues,</div>
<div style=3D"margin-top: 0px; margin-bottom: 0px;">&nbsp;</div>
<div style=3D"margin-top: 0px; margin-bottom: 0px;">[A copy of this message=
 is set to each forum at
<a href=3D"mailto:prot&eacute;g&eacute;[email protected]">prot&eacute=
;g&eacute;[email protected]</a> and
<a href=3D"mailto:prot&eacute;g&eacute;[email protected]">prot=
&eacute;g&eacute;[email protected]</a> .... apologies for cros=
s posting].</div>
<div style=3D"margin-top: 0px; margin-bottom: 0px;">&nbsp;</div>
<div style=3D"margin-top: 0px; margin-bottom: 0px;">I am seeking help on th=
e problem of Pellet reasoner 1.5.2&nbsp;in Prot&eacute;g&eacute; 3.5 alpha =
on my windows 8 PC laptop which has 8GB RAM. After looking at discussions a=
t this prestigious forum, I have set the maximum memory
 field in prot&eacute;g&eacute;.lax file as 3GB for the prot&eacute;g&eacut=
e; launching indicates that the maximum is set at 1871 MB.</div>
<div style=3D"margin-top: 0px; margin-bottom: 0px;">&nbsp;</div>
<div style=3D"margin-top: 0px; margin-bottom: 0px;">I have the following on=
tologies imported in my prot&eacute;g&eacute; project:</div>
<div style=3D"margin-top: 0px; margin-bottom: 0px;">&nbsp;</div>
<div style=3D"margin-top: 0px; margin-bottom: 0px;">1) Ontology P2 that fur=
ther imports ontology P1 which further imports ontologies&nbsp;A and B</div=
>
<div style=3D"margin-top: 0px; margin-bottom: 0px;">2) Ontology P4 that imp=
orts ontology P3</div>
<div style=3D"margin-top: 0px; margin-bottom: 0px;">3) Ontology P5</div>
<div style=3D"margin-top: 0px; margin-bottom: 0px;">&nbsp;</div>
<div style=3D"margin-top: 0px; margin-bottom: 0px;">As soon as I have impor=
ted the ontologies,&nbsp;Pellet reasoner 1.5.2 performs the consistency che=
ck which is successful.</div>
<div style=3D"margin-top: 0px; margin-bottom: 0px;">&nbsp;</div>
<div style=3D"margin-top: 0px; margin-bottom: 0px;">The problem of 'out of =
memory' starts when I add more than one individuals to&nbsp;a concept. The =
reasoner simply goes out of memory on adding more than one concept.</div>
<div style=3D"margin-top: 0px; margin-bottom: 0px;">&nbsp;</div>
<div style=3D"margin-top: 0px; margin-bottom: 0px;">Is this expected? What =
does this indicate? Could you please help me on resolving this problem as I=
 need to infer some SWRL rules on about 100 individuals?</div>
<div style=3D"margin-top: 0px; margin-bottom: 0px;">&nbsp;</div>
<div style=3D"margin-top: 0px; margin-bottom: 0px;">Very grateful and with =
regards,</div>
<div style=3D"margin-top: 0px; margin-bottom: 0px;">&nbsp;</div>
<div style=3D"margin-top: 0px; margin-bottom: 0px;">Mahmood Ahmad</div>
<div style=3D"margin-top: 0px; margin-bottom: 0px;">(PhD student)</div>
</div>
</body>
</html>

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