Re: Biopython 1.84 released

--===============7439826091112799548==
Content-Type: multipart/alternative; boundary="00000000000082b433061c25af83"

--00000000000082b433061c25af83
Content-Type: text/plain; charset="UTF-8"
Content-Transfer-Encoding: quoted-printable

Good news: We now have wheels for Linux on ARM64 on PyPI too:
https://github.com/biopython/biopython-wheels/pull/21

Bad news: Conda packages still pending:
https://github.com/conda-forge/biopython-feedstock/pull/48

Peter

--

Checksums:

$ md5sum biopython-1.84*_aarch64.whl
7fb584b77d4408d2bcdb93479b213975
 biopython-1.84-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.wh=
l
e353d2a757f1c8d049e6af00b43e981b
 biopython-1.84-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.wh=
l
550b01dcfaedb71a3d7f61842d324bde
 biopython-1.84-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.wh=
l
a439a73a6b0a42142eda9451e2bb0731
 biopython-1.84-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl

$ sha256sum biopython-1.84*_aarch64.whl
ca8d6a88b9a9718074b3f5b450f9ea5adf7112a7dbaed55d82d5b623f5859a01
 biopython-1.84-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.wh=
l
507ac3956f3107e77fee362ecb048dafb5f97cbcf110012d091418430c3227c7
 biopython-1.84-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.wh=
l
89ef3967f5a88b5bb6344bef75ae83386de53fed3966d5c8c334ad885f8db08a
 biopython-1.84-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.wh=
l
0c425a39871f652598f502671aa5f6b5125475a91333a368a47f9c611ca96db1
 biopython-1.84-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl


On Fri, Jun 28, 2024 at 6:50=E2=80=AFAM Peter Cock <[email protected]=
om>
wrote:

> Dear Biopythoneers,
>
> Biopython 1.84 has been released on PyPI, and our website.
>
> https://pypi.org/project/biopython/1.84/
> https://biopython.org/wiki/Download
>
> This release of Biopython supports Python 3.9, 3.10, 3.11 and 3.12. It ha=
s
> also
> been tested on PyPy3.9 v7.3.13. Python 3.9 is approaching end of life, ou=
r
> support for it is now deprecated. This may be our final release supportin=
g
> Python 3.9.
>
> Many thanks to the Biopython developers and community for making this
> release possible, especially the following contributors:
>
> Alex Crocker (first contribution)
> Antonio Trande (first contribution)
> Arpan Sahoo (first contribution)
> Benedict Carling (first contribution)
> Cam McMenamie (first contribution)
> Ernesto Rodriguez (first contribution)
> Jacob Byerly (first contribution)
> Jo=C3=A3o Rodrigues
> Joe Greener
> Manuel Lera Ramirez
> Michael R. Crusoe
> Michiel de Hoon
> Peter Cock
> Ricardas Ralys (first contribution)
> Rob Miller
> Thomas Holder
> Tom Eulenfeld (first contribution)
> Vladislav Kuznetsov (first contribution)
> Wibowo Arindrarto
> Yiming Qu (first contribution)
>
>
> Peter
>
> P.S. See also https://www.open-bio.org/2024/06/28/biopython-1-84-released=
/
>
> For reference, the checksum are as follows:
>
> $ md5sum biopython-1.84.zip biopython-1.84.tar.gz biopython-1.84*.whl
> 0265ce7f34d084c45b4775281f1cfb3f  biopython-1.84.zip
> 92e639d2f3627759f12f0d000131c24d  biopython-1.84.tar.gz
> 2d121260dc6acc5d0abbd5f9f32bc70a
>  biopython-1.84-cp310-cp310-macosx_10_9_x86_64.whl
> 6819b274d250b5a9d4dea7bdf40bf77b
>  biopython-1.84-cp310-cp310-macosx_11_0_arm64.whl
> af78716df05afd11a550d92faf647cf5
>  biopython-1.84-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.wh=
l
> 4e81ecdff61d2fac377af1958bfbcdc5  biopython-1.84-cp310-cp310-win32.whl
> dd6a434bf1c1c7af66ef890b0d43d398  biopython-1.84-cp310-cp310-win_amd64.wh=
l
> d471893df22b6198924f48b96c5c86fc
>  biopython-1.84-cp311-cp311-macosx_10_9_x86_64.whl
> 54fe09ad0c76ed1d522369470456699b
>  biopython-1.84-cp311-cp311-macosx_11_0_arm64.whl
> d47b8a1d0c5dc6fc66ba6c86773d02f9
>  biopython-1.84-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.wh=
l
> 1b9e7f5024a47bc17d1f122494bc4ec9  biopython-1.84-cp311-cp311-win32.whl
> 45c924f7245b1a136304d0a17b6e64f6  biopython-1.84-cp311-cp311-win_amd64.wh=
l
> 2296549d1a73b86968bf8af049a3ffde
>  biopython-1.84-cp312-cp312-macosx_10_9_x86_64.whl
> c2b8d56c26ac5ef11dcf07097dbdf6da
>  biopython-1.84-cp312-cp312-macosx_11_0_arm64.whl
> 8ce75d3e2935829082c7e6fbe5e6eaab
>  biopython-1.84-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.wh=
l
> a2fae5789c1d911948c55c63efe5b72c  biopython-1.84-cp312-cp312-win32.whl
> 1a72201772c299dd6a4c4f4e825ea829  biopython-1.84-cp312-cp312-win_amd64.wh=
l
> 1e268eff35f32b7c0c829296a0527a45
>  biopython-1.84-cp39-cp39-macosx_10_9_x86_64.whl
> 249a1c92cbed3a645cc17878564baacf
>  biopython-1.84-cp39-cp39-macosx_11_0_arm64.whl
> a2bdc8f02dd45e6616b5385138d1b8ff
>  biopython-1.84-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
> 310b7676c7ad2528a6ee10f97471f9c0  biopython-1.84-cp39-cp39-win32.whl
> 76161614a81816de4d206b45aa02eb87  biopython-1.84-cp39-cp39-win_amd64.whl
>
> And sha-256 checksums:
>
> $ sha256sum biopython-1.84.zip biopython-1.84.tar.gz biopython-1.84*.whl
> 69f0a984b5dc8b23555e1d7921670710613cdab5c0c2cf8d6abd858f975696c6
>  biopython-1.84.zip
> 60fbe6f996e8a6866a42698c17e552127d99a9aab3259d6249fbaabd0e0cc7b4
>  biopython-1.84.tar.gz
> 3c8beded38884abae4c74cb6ce54142da670273fd0b2919bd0f84f6e34d3056b
>  biopython-1.84-cp310-cp310-macosx_10_9_x86_64.whl
> b51ef31bfb79872a182a85b4113625e1b553c024bb1586c72ac98b479f8d8fe4
>  biopython-1.84-cp310-cp310-macosx_11_0_arm64.whl
> 2dc2e77490725060330003f73b6b7d5172f8bc160f180de5877a2e899ad999d4
>  biopython-1.84-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.wh=
l
> 4f39b38e7625c33384954130d90f19984e91cb5af64e2fb128603359f86884ad
>  biopython-1.84-cp310-cp310-win32.whl
> 9e3f7476fd81f31e048965d7be2826f018686e870d96870f440b609002953954
>  biopython-1.84-cp310-cp310-win_amd64.whl
> 2d4ed30aebd96b4aadeb1f04adce92795c696f5bd56d1fd45517b89059918dd4
>  biopython-1.84-cp311-cp311-macosx_10_9_x86_64.whl
> c792508988fc3ccf18eaae2a826c9cd97f1c27fb55bb87bdce6a101fee9f5a0c
>  biopython-1.84-cp311-cp311-macosx_11_0_arm64.whl
> 894ee7533cca7f5f9769e2595fbe7b0dba5018f39a2170753d101a13e7585ff4
>  biopython-1.84-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.wh=
l
> 7f4c746825721ec367c2f2d6a8cda3bc6495a1e084e5b2fbab26e9467706603f
>  biopython-1.84-cp311-cp311-win32.whl
> 2cb8e839ab472244b6082635ad1df67c94c05df0bd02a023103ed00ea66c4d20
>  biopython-1.84-cp311-cp311-win_amd64.whl
> ba58a6d76288333c5f178a426116953fa68204bd0cfc401694087dd4f96d0059
>  biopython-1.84-cp312-cp312-macosx_10_9_x86_64.whl
> ee3566f6dc3acf20e238540daf896f0af20cff531521bf41fdf5143f73e209ae
>  biopython-1.84-cp312-cp312-macosx_11_0_arm64.whl
> 61765b71f84814a1eeb55ab222f43330aa7ad3e55ab91e8b444706149c67a281
>  biopython-1.84-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.wh=
l
> 52b6098f47d6b90fc8a5e8579b81ee50047e9108f0976e69c891ae0c4817e42d
>  biopython-1.84-cp312-cp312-win32.whl
> ecff2fcf5da29b600474c0bfcdbbac0f98b25e22fe60a853d0ee798c00f7396c
>  biopython-1.84-cp312-cp312-win_amd64.whl
> f4c1c9ad7da9eaf8d8f4515bf931a7f6548a468e7ef29b8429e31aaff2d95f4c
>  biopython-1.84-cp39-cp39-macosx_10_9_x86_64.whl
> 9fbd4b67d3e71b0d716a1712ab8b4e57981c6549ba17ce5626ffa8976d170da7
>  biopython-1.84-cp39-cp39-macosx_11_0_arm64.whl
> 7b69d59f9a762c5bb5f77ed03f197dad05ebd702c34d2cae7be98f1f30e04089
>  biopython-1.84-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
> 25f4ef193a307e403eb532e8f060b818e2d75f65803a2b0f4e645b0cae131b4e
>  biopython-1.84-cp39-cp39-win32.whl
> b64575363bb2344073c949fd69a0bf3ea015b447aa1494e4813376855b479118
>  biopython-1.84-cp39-cp39-win_amd64.whl
>

--00000000000082b433061c25af83
Content-Type: text/html; charset="UTF-8"
Content-Transfer-Encoding: quoted-printable

<div dir=3D"ltr"><div>Good news: We now have wheels for Linux on ARM64 on P=
yPI too:</div><div><a href=3D"https://github.com/biopython/biopython-wheels=
/pull/21">https://github.com/biopython/biopython-wheels/pull/21</a></div><d=
iv><br></div><div>Bad news: Conda packages still pending:</div><div><a href=
=3D"https://github.com/conda-forge/biopython-feedstock/pull/48">https://git=
hub.com/conda-forge/biopython-feedstock/pull/48</a></div><div><br></div><di=
v>Peter</div><div><br></div><div>--</div><div><br></div><div>Checksums:</di=
v><div><br></div><div>$ md5sum biopython-1.84*_aarch64.whl<br>7fb584b77d440=
8d2bcdb93479b213975 =C2=A0biopython-1.84-cp310-cp310-manylinux_2_17_aarch64=
.manylinux2014_aarch64.whl<br>e353d2a757f1c8d049e6af00b43e981b =C2=A0biopyt=
hon-1.84-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl<br>55=
0b01dcfaedb71a3d7f61842d324bde =C2=A0biopython-1.84-cp312-cp312-manylinux_2=
_17_aarch64.manylinux2014_aarch64.whl<br>a439a73a6b0a42142eda9451e2bb0731 =
=C2=A0biopython-1.84-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64=
.whl</div><div><br></div><div>$ sha256sum biopython-1.84*_aarch64.whl<br>ca=
8d6a88b9a9718074b3f5b450f9ea5adf7112a7dbaed55d82d5b623f5859a01 =C2=A0biopyt=
hon-1.84-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl<br>50=
7ac3956f3107e77fee362ecb048dafb5f97cbcf110012d091418430c3227c7 =C2=A0biopyt=
hon-1.84-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl<br>89=
ef3967f5a88b5bb6344bef75ae83386de53fed3966d5c8c334ad885f8db08a =C2=A0biopyt=
hon-1.84-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl<br>0c=
425a39871f652598f502671aa5f6b5125475a91333a368a47f9c611ca96db1 =C2=A0biopyt=
hon-1.84-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl</div><d=
iv><br></div></div><br><div class=3D"gmail_quote"><div dir=3D"ltr" class=3D=
"gmail_attr">On Fri, Jun 28, 2024 at 6:50=E2=80=AFAM Peter Cock &lt;<a href=
=3D"mailto:[email protected]">[email protected]</a>&gt; wro=
te:<br></div><blockquote class=3D"gmail_quote" style=3D"margin:0px 0px 0px =
0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir=3D"=
ltr">Dear Biopythoneers,<br><br>Biopython 1.84 has been released on PyPI, a=
nd our website.<br><br><a href=3D"https://pypi.org/project/biopython/1.84/"=
 target=3D"_blank">https://pypi.org/project/biopython/1.84/</a><br><a href=
=3D"https://biopython.org/wiki/Download" target=3D"_blank">https://biopytho=
n.org/wiki/Download</a><br><br>This release of Biopython supports Python 3.=
9, 3.10, 3.11 and 3.12. It has also<br>been tested on PyPy3.9 v7.3.13. Pyth=
on 3.9 is approaching end of life, our<br>support for it is now deprecated.=
 This may be our final release supporting<br>Python 3.9.<br><br>Many thanks=
 to the Biopython developers and community for making this<br>release possi=
ble, especially the following contributors:<br><br>Alex Crocker (first cont=
ribution)<br>Antonio Trande (first contribution)<br>Arpan Sahoo (first cont=
ribution)<br>Benedict Carling (first contribution)<br>Cam McMenamie (first =
contribution)<br>Ernesto Rodriguez (first contribution)<br>Jacob Byerly (fi=
rst contribution)<br>Jo=C3=A3o Rodrigues<br>Joe Greener<br>Manuel Lera Rami=
rez<br>Michael R. Crusoe<br>Michiel de Hoon<br>Peter Cock<br>Ricardas Ralys=
 (first contribution)<br>Rob Miller<br>Thomas Holder<br>Tom Eulenfeld (firs=
t contribution)<br>Vladislav Kuznetsov (first contribution)<br>Wibowo Arind=
rarto<br>Yiming Qu (first contribution)<br><br><br>Peter<br><br>P.S. See al=
so <a href=3D"https://www.open-bio.org/2024/06/28/biopython-1-84-released/"=
 target=3D"_blank">https://www.open-bio.org/2024/06/28/biopython-1-84-relea=
sed/</a><br><br>For reference, the checksum are as follows:<br><br>$ md5sum=
 biopython-1.84.zip biopython-1.84.tar.gz biopython-1.84*.whl<br>0265ce7f34=
d084c45b4775281f1cfb3f =C2=A0biopython-1.84.zip<br>92e639d2f3627759f12f0d00=
0131c24d =C2=A0biopython-1.84.tar.gz<br>2d121260dc6acc5d0abbd5f9f32bc70a =
=C2=A0biopython-1.84-cp310-cp310-macosx_10_9_x86_64.whl<br>6819b274d250b5a9=
d4dea7bdf40bf77b =C2=A0biopython-1.84-cp310-cp310-macosx_11_0_arm64.whl<br>=
af78716df05afd11a550d92faf647cf5 =C2=A0biopython-1.84-cp310-cp310-manylinux=
_2_17_x86_64.manylinux2014_x86_64.whl<br>4e81ecdff61d2fac377af1958bfbcdc5 =
=C2=A0biopython-1.84-cp310-cp310-win32.whl<br>dd6a434bf1c1c7af66ef890b0d43d=
398 =C2=A0biopython-1.84-cp310-cp310-win_amd64.whl<br>d471893df22b6198924f4=
8b96c5c86fc =C2=A0biopython-1.84-cp311-cp311-macosx_10_9_x86_64.whl<br>54fe=
09ad0c76ed1d522369470456699b =C2=A0biopython-1.84-cp311-cp311-macosx_11_0_a=
rm64.whl<br>d47b8a1d0c5dc6fc66ba6c86773d02f9 =C2=A0biopython-1.84-cp311-cp3=
11-manylinux_2_17_x86_64.manylinux2014_x86_64.whl<br>1b9e7f5024a47bc17d1f12=
2494bc4ec9 =C2=A0biopython-1.84-cp311-cp311-win32.whl<br>45c924f7245b1a1363=
04d0a17b6e64f6 =C2=A0biopython-1.84-cp311-cp311-win_amd64.whl<br>2296549d1a=
73b86968bf8af049a3ffde =C2=A0biopython-1.84-cp312-cp312-macosx_10_9_x86_64.=
whl<br>c2b8d56c26ac5ef11dcf07097dbdf6da =C2=A0biopython-1.84-cp312-cp312-ma=
cosx_11_0_arm64.whl<br>8ce75d3e2935829082c7e6fbe5e6eaab =C2=A0biopython-1.8=
4-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl<br>a2fae5789c1=
d911948c55c63efe5b72c =C2=A0biopython-1.84-cp312-cp312-win32.whl<br>1a72201=
772c299dd6a4c4f4e825ea829 =C2=A0biopython-1.84-cp312-cp312-win_amd64.whl<br=
>1e268eff35f32b7c0c829296a0527a45 =C2=A0biopython-1.84-cp39-cp39-macosx_10_=
9_x86_64.whl<br>249a1c92cbed3a645cc17878564baacf =C2=A0biopython-1.84-cp39-=
cp39-macosx_11_0_arm64.whl<br>a2bdc8f02dd45e6616b5385138d1b8ff =C2=A0biopyt=
hon-1.84-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl<br>310b76=
76c7ad2528a6ee10f97471f9c0 =C2=A0biopython-1.84-cp39-cp39-win32.whl<br>7616=
1614a81816de4d206b45aa02eb87 =C2=A0biopython-1.84-cp39-cp39-win_amd64.whl<b=
r><br>And sha-256 checksums:<br><br>$ sha256sum biopython-1.84.zip biopytho=
n-1.84.tar.gz biopython-1.84*.whl<br>69f0a984b5dc8b23555e1d7921670710613cda=
b5c0c2cf8d6abd858f975696c6 =C2=A0biopython-1.84.zip<br>60fbe6f996e8a6866a42=
698c17e552127d99a9aab3259d6249fbaabd0e0cc7b4 =C2=A0biopython-1.84.tar.gz<br=
>3c8beded38884abae4c74cb6ce54142da670273fd0b2919bd0f84f6e34d3056b =C2=A0bio=
python-1.84-cp310-cp310-macosx_10_9_x86_64.whl<br>b51ef31bfb79872a182a85b41=
13625e1b553c024bb1586c72ac98b479f8d8fe4 =C2=A0biopython-1.84-cp310-cp310-ma=
cosx_11_0_arm64.whl<br>2dc2e77490725060330003f73b6b7d5172f8bc160f180de5877a=
2e899ad999d4 =C2=A0biopython-1.84-cp310-cp310-manylinux_2_17_x86_64.manylin=
ux2014_x86_64.whl<br>4f39b38e7625c33384954130d90f19984e91cb5af64e2fb1286033=
59f86884ad =C2=A0biopython-1.84-cp310-cp310-win32.whl<br>9e3f7476fd81f31e04=
8965d7be2826f018686e870d96870f440b609002953954 =C2=A0biopython-1.84-cp310-c=
p310-win_amd64.whl<br>2d4ed30aebd96b4aadeb1f04adce92795c696f5bd56d1fd45517b=
89059918dd4 =C2=A0biopython-1.84-cp311-cp311-macosx_10_9_x86_64.whl<br>c792=
508988fc3ccf18eaae2a826c9cd97f1c27fb55bb87bdce6a101fee9f5a0c =C2=A0biopytho=
n-1.84-cp311-cp311-macosx_11_0_arm64.whl<br>894ee7533cca7f5f9769e2595fbe7b0=
dba5018f39a2170753d101a13e7585ff4 =C2=A0biopython-1.84-cp311-cp311-manylinu=
x_2_17_x86_64.manylinux2014_x86_64.whl<br>7f4c746825721ec367c2f2d6a8cda3bc6=
495a1e084e5b2fbab26e9467706603f =C2=A0biopython-1.84-cp311-cp311-win32.whl<=
br>2cb8e839ab472244b6082635ad1df67c94c05df0bd02a023103ed00ea66c4d20 =C2=A0b=
iopython-1.84-cp311-cp311-win_amd64.whl<br>ba58a6d76288333c5f178a426116953f=
a68204bd0cfc401694087dd4f96d0059 =C2=A0biopython-1.84-cp312-cp312-macosx_10=
_9_x86_64.whl<br>ee3566f6dc3acf20e238540daf896f0af20cff531521bf41fdf5143f73=
e209ae =C2=A0biopython-1.84-cp312-cp312-macosx_11_0_arm64.whl<br>61765b71f8=
4814a1eeb55ab222f43330aa7ad3e55ab91e8b444706149c67a281 =C2=A0biopython-1.84=
-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl<br>52b6098f47d6=
b90fc8a5e8579b81ee50047e9108f0976e69c891ae0c4817e42d =C2=A0biopython-1.84-c=
p312-cp312-win32.whl<br>ecff2fcf5da29b600474c0bfcdbbac0f98b25e22fe60a853d0e=
e798c00f7396c =C2=A0biopython-1.84-cp312-cp312-win_amd64.whl<br>f4c1c9ad7da=
9eaf8d8f4515bf931a7f6548a468e7ef29b8429e31aaff2d95f4c =C2=A0biopython-1.84-=
cp39-cp39-macosx_10_9_x86_64.whl<br>9fbd4b67d3e71b0d716a1712ab8b4e57981c654=
9ba17ce5626ffa8976d170da7 =C2=A0biopython-1.84-cp39-cp39-macosx_11_0_arm64.=
whl<br>7b69d59f9a762c5bb5f77ed03f197dad05ebd702c34d2cae7be98f1f30e04089 =C2=
=A0biopython-1.84-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl<=
br>25f4ef193a307e403eb532e8f060b818e2d75f65803a2b0f4e645b0cae131b4e =C2=A0b=
iopython-1.84-cp39-cp39-win32.whl<br>b64575363bb2344073c949fd69a0bf3ea015b4=
47aa1494e4813376855b479118 =C2=A0biopython-1.84-cp39-cp39-win_amd64.whl</di=
v>
</blockquote></div>

--00000000000082b433061c25af83--

--===============7439826091112799548==
Content-Type: text/plain; charset="us-ascii"
MIME-Version: 1.0
Content-Transfer-Encoding: 7bit
Content-Disposition: inline

_______________________________________________
Biopython-announce mailing list  -  [email protected]
https://mailman.open-bio.org/mailman/listinfo/biopython-announce

--===============7439826091112799548==--