Biopython 1.10 Available
Jeffrey Chang <[email protected]> Tue, 17 Dec 2002 22:43:11 -0800
| Newsgroups | gmane.comp.python.bio.announce |
|---|---|
| Message-ID | <20021218064310.GA8656__6616.54055952585$1040194709@springfield.stanford.edu> |
Hello Everybody, I've just made Biopython 1.10 available at: http://www.biopython.org/Download/ This is a major release with lots of bug fixes and new features. Everyone using Biopython is strongly recommended to upgrade. Note that the Python version requirement has been bumped to 2.2. This is the first(-ish) stable release of Biopython. This means that the major core functionality and internals are in place. People have been using Biopython to do real work for a while now, so most of the major issues have been worked out. Please send mail to [email protected] if there are any problems with this release. Many thanks to everyone who has contributed with bug reports, patches, documentation, and any other types of support! Thanks, The Biopython Core Team RELEASE NOTES: Dec 17, 2002: Biopython 1.10 Python requirement bumped up to 2.2 hierarchy reorg, many things moved upwards into Bio namespace pairwise2 replaces fastpairwise and pairwise removed deprecated Sequence.py package minor bug fix in File.SGMLStripper added Scripts/debug/debug_blast_parser.py to diagnoze blast parsing errors IPI supported by SwissProt/SProt.py parser large speedup for kmeans new registry framework for generic access to databases and parsers small bug fix in stringfns.split scripts that access NCBI moved over to new EUtils system new crc module biblio.py supports the EBI Bibliographic database new CDD parser new Ndb parser new ECell parser new Geo parser access to GFF databases new KDTree data structure new LocusLink parser new MarkovModel algorithm new Saf parser miscellaneous sequence handling functions in sequtils new SVDSuperimpose algorithm _______________________________________________ BioPython-announce mailing list - [email protected] http://biopython.org/mailman/listinfo/biopython-announce