Re: conda install and/or wheels for Windows(and other platforms?)
"PD Dr. Markus Piotrowski" <[email protected]>
| Newsgroups | gmane.comp.python.bio.devel |
|---|---|
| Message-ID | <[email protected]> |
My thoughts regarding Anaconda: - A standard Anaconda installation does already contain Biopython. So if Anaconda is mentioned, it's probably better to show how to update Biopython. - I don't know how often Anaconda updates its packages. Last time I had the feeling (but this could be wrong) that it took some time until the latest Biopython version was provided. - People who are using Anaconda/Conda probably already know how to install packages. What about a phrasing like "Biopython is also part of the Anaconda package, [here some words about Anaconda]....Be sure to update to the most recent Biopython version with 'conda update Biopython'. I'm only working on Windows computers, so I'm used to using different update/installation methods. Not all packages have separate Windows installers. Thus I think pip is great. But I'm also using Miniconda on some computers. Markus Am 08.04.2016 um 05:55 schrieb Saket Choudhary: > I proposed a minor change in the README to add instructions for > Anaconda users: https://github.com/biopython/biopython/pull/804. > > For non-Anaconda Windows users, another (cleaner?) way would be to > support binary wheels. Projects like numpy, scipy, sklearn have been > supporting the binary wheels on pypi for Windows and lately for Linux > [1,2] > > What do people think about moving to binary wheels for pip? > > [1] https://github.com/numpy/numpy/issues/5479 > [2] https://mail.scipy.org/pipermail/numpy-discussion/2016-April/075234.html > > > Saket Choudhary > _______________________________________________ > Biopython-dev mailing list > [email protected] > http://mailman.open-bio.org/mailman/listinfo/biopython-dev -- _________________________________ Dr. Markus Piotrowski Privatdozent/Akademischer Rat Lehrstuhl für Pflanzenphysiologie ND 3/49 Universitätsstr. 150 44801 Bochum Tel. xx49-(0)234-3224290 Fax. xx49-(0)234-3214187 http://www.ruhr-uni-bochum.de/pflaphy/Seiten_dt/PG_Piotrowski_d.html http://homepage.ruhr-uni-bochum.de/Markus.Piotrowski/Index.html