Re: New Homepage - "Brute force" effort of Community?

Vincent Davis <[email protected]>
Newsgroups gmane.comp.python.bio.devel
Message-ID <CALyJZZWO1NnHE6sg_cCbKRpay5Bdo1pQ6xeGyLrO4k=Eq=LUMg@mail.gmail.com> 
I realised my All bad links file was blank, I have attached 2 more files.
Bad external and a list of what I guess are internal wiki/md links that are
bad.
I will upload these to issue #19.
https://github.com/biopython/biopython.github.io/issues/19
I would like to create a new issues on github for external links only, and
start submitting pull request to that issue. Is that ok?


Vincent Davis
720-301-3003

On Tue, Apr 19, 2016 at 2:54 PM, Peter Cock <[email protected]>
wrote:

> Thanks Vincent,
>
> A lot of these are case problems, which should be easy
> to fix my hand or a little search/replace (e.g.with sed).
> e.g. http://biopython.org/wiki/mailing_lists
> --> http://biopython.org/wiki/Mailing_lists
>
> I thought I'd checked a good sample of these during
> the migration, but there must be some corner case
> and/or gap in the pandoc conversion?
>
> Other internal failures are missing release downloads:
> https://github.com/biopython/biopython.github.io/issues/7
>
> Peter
>
> On Tue, Apr 19, 2016 at 3:37 PM, Vincent Davis <[email protected]>
> wrote:
> > I hope this is helpful and not noise.
> > Attached are two bad link reports, internal only and all links.
> >
> > _______________________________________________
> > Biopython-dev mailing list
> > [email protected]
> > http://mailman.open-bio.org/mailman/listinfo/biopython-dev
>

_______________________________________________
Biopython-dev mailing list
[email protected]
http://mailman.open-bio.org/mailman/listinfo/biopython-dev
bad internal wiki links.xlsx (application/vnd.openxmlformats-officedocument.spreadsheetml.sheet, 55.2 KB) - not displayed
External links April 19 2016.csv (text/csv, 38.2 KB) 
Status,URL,Redirected to,Link Text,Appears on,Time stamp,Distance
unsupported URL,bp:ClustalW_multiple_alignment_format,,alignment format of Clustal X and Clustal W,http://biopython.org/wiki/AlignIO,"Apr 19, 2016, 8:28:41 AM",3
unsupported URL,bp:ClustalW_multiple_alignment_format,,alignment format of Clustal X and Clustal W,http://biopython.org/wiki/SeqIO,"Apr 19, 2016, 8:28:41 AM",3
unsupported URL,bp:EMBL_sequence_format,,EMBL flat file format,http://biopython.org/wiki/SeqIO,"Apr 19, 2016, 8:28:42 AM",3
unsupported URL,bp:FASTA_sequence_format,,FASTA file format,http://biopython.org/wiki/SeqIO,"Apr 19, 2016, 8:28:42 AM",3
unsupported URL,bp:GenBank_sequence_format,,GenBank or GenPept flat file format,http://biopython.org/wiki/SeqIO,"Apr 19, 2016, 8:28:42 AM",3
unsupported URL,bp:HOWTO:SeqIO,,BioPerl‰ÛªsSeqIO,http://biopython.org/wiki/SeqIO,"Apr 19, 2016, 8:28:42 AM",3
unsupported URL,bp:HOWTO:SeqIO,,BioPerl‰Ûªs SeqIO,http://biopython.org/wiki/SeqIO,"Apr 19, 2016, 8:28:42 AM",3
unsupported URL,bp:HOWTO:SeqIO%23Formats,,BioPerl‰Ûªs SeqIO,http://biopython.org/wiki/AlignIO,"Apr 19, 2016, 8:28:41 AM",3
unsupported URL,bp:HOWTO:SeqIO%23Formats,,BioPerl‰ÛªsSeqIO,http://biopython.org/wiki/SeqIO,"Apr 19, 2016, 8:28:41 AM",3
unsupported URL,bp:KEGG_sequence_format,,KEGGformat,http://biopython.org/wiki/SeqIO_dev,"Apr 19, 2016, 8:29:34 AM",4
unsupported URL,bp:Mase_multiple_alignment_format,,MASE format,http://biopython.org/wiki/AlignIO,"Apr 19, 2016, 8:28:41 AM",3
unsupported URL,bp:Mase_multiple_alignment_format,,MASE alignment format,http://biopython.org/wiki/SeqIO,"Apr 19, 2016, 8:28:41 AM",3
unsupported URL,bp:Multiple_alignment_formats,,multiple alignmentformats,http://biopython.org/wiki/SeqIO,"Apr 19, 2016, 8:28:42 AM",3
unsupported URL,bp:NEXUS_multiple_alignment_format,,NEXUS multiple alignment,http://biopython.org/wiki/SeqIO,"Apr 19, 2016, 8:28:42 AM",3
unsupported URL,bp:PHD_sequence_format,,PHD files,http://biopython.org/wiki/SeqIO,"Apr 19, 2016, 8:28:42 AM",3
unsupported URL,bp:PIR_sequence_format,,Protein Information Resource (PIR),http://biopython.org/wiki/SeqIO,"Apr 19, 2016, 8:28:42 AM",3
unsupported URL,bp:Qual_sequence_format,,Qual files,http://biopython.org/wiki/SeqIO,"Apr 19, 2016, 8:28:42 AM",3
unsupported URL,bp:Sequence_formats,,sequence fileformats,http://biopython.org/wiki/SeqIO,"Apr 19, 2016, 8:28:42 AM",3
unsupported URL,bp:Stockholm_multiple_alignment_format,,Stockholm alignment format,http://biopython.org/wiki/SeqIO,"Apr 19, 2016, 8:28:42 AM",3
unsupported URL,bp:Swissprot_sequence_format,,Swiss-Prot,http://biopython.org/wiki/SeqIO,"Apr 19, 2016, 8:28:42 AM",3
unsupported URL,bp:Tab_sequence_format,,Simple two column tab separated sequence files,http://biopython.org/wiki/SeqIO,"Apr 19, 2016, 8:28:42 AM",3
unsupported URL,git://github.com/barwil/biopython.git,,git://github.com/barwil/biopython.git,http://biopython.org/wiki/GitUsage,"Apr 19, 2016, 8:28:49 AM",3
unsupported URL,git://github.com/biopython/biopython.git,,git://github.com/biopython/biopython.git,http://biopython.org/wiki/SourceCode,"Apr 19, 2016, 8:28:06 AM",2
unsupported URL,git://github.com/etal/biopython.git,,git://github.com/etal/biopython.git,http://biopython.org/wiki/GitUsage,"Apr 19, 2016, 8:28:49 AM",3
unsupported URL,git://github.com/polyatail/biopython.git,,git://github.com/polyatail/biopython.git,http://biopython.org/wiki/Multiple_Alignment_Format,"Apr 19, 2016, 8:29:33 AM",4
unsupported URL,git://github.com/polyatail/biopython.git,,git://github.com/polyatail/biopython.git,http://biopython.org/wiki/Multiple_Alignment_Format,"Apr 19, 2016, 8:29:33 AM",4
unsupported URL,GO:0008270,,GO:0008270,http://biopython.org/DIST/docs/api/Bio.Phylo.PhyloXML.Annotation-class.html,"Apr 19, 2016, 8:30:05 AM",5
404 not found,http://abacus.gene.ucl.ac.uk/CME,,Computational MolecularEvolution,http://biopython.org/wiki/Google_Summer_of_Code,"Apr 19, 2016, 8:29:38 AM",4
404 not found,http://align.bmr.kyushu-u.ac.jp/mafft/software,,http://align.bmr.kyushu-u.ac.jp/mafft/software/,http://biopython.org/DIST/docs/api/Bio.Align.Applications._Mafft.MafftCommandline-class.html,"Apr 19, 2016, 8:30:04 AM",5
A server with the specified hostname could not be found.,http://alpha2.bmc.uu.se/hicup,,http://alpha2.bmc.uu.se/hicup/,http://biopython.org/DIST/docs/api/Bio.Crystal.Hetero-class.html,"Apr 19, 2016, 8:30:05 AM",5
A server with the specified hostname could not be found.,http://astral.stanford.edu,,http://astral.stanford.edu/,http://biopython.org/DIST/docs/api/Bio.SCOP-module.html,"Apr 19, 2016, 8:29:56 AM",5
A server with the specified hostname could not be found.,http://astral.stanford.edu/raf.html,,http://astral.stanford.edu/raf.html,http://biopython.org/DIST/docs/api/Bio.SCOP.Raf-module.html,"Apr 19, 2016, 8:29:56 AM",5
410 no longer exists,http://atavism.webs.com/btCOI.nex,,btCOI.nex,http://biopython.org/wiki/Concatenate_nexus,"Apr 19, 2016, 8:29:34 AM",4
410 no longer exists,http://atavism.webs.com/btCOII.nex,,btCOII.nex,http://biopython.org/wiki/Concatenate_nexus,"Apr 19, 2016, 8:29:34 AM",4
410 no longer exists,http://atavism.webs.com/btITS.nex,,btITS.nex,http://biopython.org/wiki/Concatenate_nexus,"Apr 19, 2016, 8:29:34 AM",4
404 not found,http://bartek.rezolwenta.eu.org/biopython_git_update,,1,http://biopython.org/wiki/GitMigration,"Apr 19, 2016, 8:28:51 AM",3
404 not found,http://bioinf.scri.ac.uk/lp/programs.html,,http://bioinf.scri.ac.uk/lp/programs.html,http://biopython.org/wiki/Scriptcentral,"Apr 19, 2016, 8:28:03 AM",2
404 not found,http://bioinf.scri.ac.uk/lp/programs.html,,http://bioinf.scri.ac.uk/lp/programs.html,http://biopython.org/wiki/Scriptcentral,"Apr 19, 2016, 8:28:03 AM",2
404 not found,http://bioinformatics.anl.gov/seguid,,http://bioinformatics.anl.gov/seguid/,http://biopython.org/DIST/docs/api/Bio.SeqUtils.CheckSum-module.html,"Apr 19, 2016, 8:29:59 AM",5
A server with the specified hostname could not be found.,http://blog.vladimirliu.com/2011/05/05/convert-between-entrez-ids-and-refseq-ids-using-biopython,,full example of converting betweenEntrez IDs and RefSeqIDs,http://biopython.org/wiki/Annotate_Entrez_Gene_IDs,"Apr 19, 2016, 8:29:34 AM",4
404 not found,http://bonsai.ims.u-tokyo.ac.jp/~mdehoon,,http://bonsai.ims.u-tokyo.ac.jp/~mdehoon,http://biopython.org/wiki/Participants,"Apr 19, 2016, 8:28:09 AM",2
404 not found,http://bonsai.ims.u-tokyo.ac.jp/~mdehoon/software/cluster,,http://bonsai.ims.u-tokyo.ac.jp/~mdehoon/software/cluster/,http://biopython.org/wiki/Scriptcentral,"Apr 19, 2016, 8:28:04 AM",2
404 not found,http://bonsai.ims.u-tokyo.ac.jp/~mdehoon/software/cluster/cluster3.pdf,,our website,http://biopython.org/DIST/docs/tutorial/Tutorial.html,"Apr 19, 2016, 8:28:28 AM",3
404 not found,http://bow.web.id/blog/tag/gsoc,,blog,http://biopython.org/wiki/Google_Summer_of_Code,"Apr 19, 2016, 8:29:38 AM",4
404 not found,http://bow.web.id/blog/tag/gsoc,,blog,http://biopython.org/wiki/SearchIO,"Apr 19, 2016, 8:29:38 AM",4
404 not found,http://bugzilla.open-bio.org/buglist.cgi?product=Biopython&bug_status=NEW&bug_status=ASSIGNED&bug_status=REOPENED&bug_severity=enhancement,,BugzillaSearch,http://biopython.org/wiki/Active_projects,"Apr 19, 2016, 8:28:46 AM",3
404 not found,http://bugzilla.open-bio.org/show_bug.cgi?id=2059,,Bug 2059,http://biopython.org/wiki/SeqIO_dev,"Apr 19, 2016, 8:29:34 AM",4
404 not found,http://bugzilla.open-bio.org/show_bug.cgi?id=2294,,Bug 2294,http://biopython.org/wiki/SeqIO,"Apr 19, 2016, 8:28:42 AM",3
404 not found,http://bugzilla.open-bio.org/show_bug.cgi?id=2395,,bug2395,http://biopython.org/wiki/BioSQL,"Apr 19, 2016, 8:28:44 AM",3
404 not found,http://bugzilla.open-bio.org/show_bug.cgi?id=2493,,BioSQL enhancement request2493,http://biopython.org/wiki/BioSQL,"Apr 19, 2016, 8:28:43 AM",3
404 not found,http://bugzilla.open-bio.org/show_bug.cgi?id=2557,,2557,http://biopython.org/wiki/AlignIO,"Apr 19, 2016, 8:28:41 AM",3
404 not found,http://bugzilla.open-bio.org/show_bug.cgi?id=2560,,Bug2560,http://biopython.org/wiki/SeqIO_dev,"Apr 19, 2016, 8:29:34 AM",4
404 not found,http://bugzilla.open-bio.org/show_bug.cgi?id=2821,,Sometimes,http://biopython.org/wiki/Retrieve_nonmatching_blast_queries,"Apr 19, 2016, 8:29:35 AM",4
Could not connect to the server.,http://cmgm.stanford.edu/~asab/pyml/pyml.html,,http://cmgm.stanford.edu/~asab/pyml/pyml.html,http://biopython.org/wiki/Scriptcentral,"Apr 19, 2016, 8:28:03 AM",2
404 not found,http://cmpg.unibe.ch/software/arlequin3/arlequin31.pdf,,Arlequin3manual,http://biopython.org/wiki/PopGen_dev_Statistics,"Apr 19, 2016, 8:30:05 AM",5
The request timed out.,http://code.open-bio.org/svnweb/index.cgi/biosql/browse/biosql-schema,,http://code.open-bio.org/svnweb/index.cgi/biosql/browse/biosql-schema,http://biopython.org/DIST/docs/biosql/python_biosql_basic.html,"Apr 19, 2016, 8:28:42 AM",3
The request timed out.,http://code.open-bio.org/svnweb/index.cgi/biosql/browse/biosql-schema,,http://code.open-bio.org/svnweb/index.cgi/biosql/browse/biosql-schema,http://biopython.org/DIST/docs/biosql/python_biosql_basic.html,"Apr 19, 2016, 8:28:42 AM",3
The request timed out.,http://code.open-bio.org/svnweb/index.cgi/biosql/view/biosql-schema/trunk/INSTALL,,BioSQL schema INSTALLinstructions,http://biopython.org/wiki/BioSQL,"Apr 19, 2016, 8:28:43 AM",3
404 not found,http://codespeak.net/lxml,,lxml,http://biopython.org/wiki/Phylo,"Apr 19, 2016, 8:29:31 AM",4
Could not connect to the server.,http://csb.stanford.edu,,Prof. MichaelLevitt,http://biopython.org/wiki/User%3AJoaor,"Apr 19, 2016, 8:30:06 AM",5
The request timed out.,http://csb.stanford.edu/~rachel/fragments,,http://csb.stanford.edu/~rachel/fragments/,http://biopython.org/DIST/docs/api/Bio.PDB.FragmentMapper%27-module.html,"Apr 19, 2016, 8:29:50 AM",5
The request timed out.,http://csb.stanford.edu/~rachel/fragments,,http://csb.stanford.edu/~rachel/fragments/,http://biopython.org/DIST/docs/api/Bio.PDB.FragmentMapper'-module.html,"Apr 19, 2016, 8:29:50 AM",5
Could not connect to the server.,http://csb.stanford.edu/rachel/fragments,,http://csb.stanford.edu/rachel/fragments/,http://biopython.org/DIST/docs/api/Bio.PDB.FragmentMapper%27-module.html,"Apr 19, 2016, 8:29:50 AM",5
Could not connect to the server.,http://csb.stanford.edu/rachel/fragments,,http://csb.stanford.edu/rachel/fragments/,http://biopython.org/DIST/docs/api/Bio.PDB.FragmentMapper%27-module.html,"Apr 19, 2016, 8:29:50 AM",5
Could not connect to the server.,http://csb.stanford.edu/rachel/fragments,,http://csb.stanford.edu/rachel/fragments/,http://biopython.org/DIST/docs/api/Bio.PDB.FragmentMapper'-module.html,"Apr 19, 2016, 8:29:50 AM",5
Could not connect to the server.,http://csb.stanford.edu/rachel/fragments,,http://csb.stanford.edu/rachel/fragments/,http://biopython.org/DIST/docs/api/Bio.PDB.FragmentMapper'-module.html,"Apr 19, 2016, 8:29:50 AM",5
The request timed out.,http://cvs.biopython.org,,http://cvs.biopython.org/,http://biopython.org/wiki/CVS,"Apr 19, 2016, 8:28:50 AM",3
The request timed out.,http://cvs.biopython.org,,http://cvs.biopython.org/,http://biopython.org/wiki/CVS,"Apr 19, 2016, 8:28:50 AM",3
The request timed out.,http://cvs.biopython.org/cgi-bin/viewcvs/viewcvs.cgi/?cvsroot=biopython,,Biopython CVSHome,http://biopython.org/wiki/CVS,"Apr 19, 2016, 8:28:50 AM",3
The request timed out.,http://cvs.biopython.org/cgi-bin/viewcvs/viewcvs.cgi/biopython/Bio/SeqIO/?cvsroot=biopython,,CVS,http://biopython.org/wiki/SeqIO_dev,"Apr 19, 2016, 8:29:34 AM",4
410 no longer exists,http://data.gbif.org/occurrences,,searched manually,http://biopython.org/wiki/BioGeography,"Apr 19, 2016, 8:29:39 AM",4
410 no longer exists,http://data.gbif.org/tutorial/services,,Occurrence recorddata service,http://biopython.org/wiki/BioGeography,"Apr 19, 2016, 8:29:40 AM",4
410 no longer exists,http://data.gbif.org/tutorial/services,,Using data from the GBIFportal,http://biopython.org/wiki/BioGeography,"Apr 19, 2016, 8:29:40 AM",4
404 not found < 301 moved permanently,http://dkbza.org/pydot.html,https://sites.google.com/site/erocarrera/pydot.html,pydot,http://biopython.org/wiki/Phylo,"Apr 19, 2016, 8:29:31 AM",4
404 not found < 301 moved permanently,http://dkbza.org/pydot.html,https://sites.google.com/site/erocarrera/pydot.html,pydot,http://biopython.org/wiki/Phylo,"Apr 19, 2016, 8:29:31 AM",4
The request timed out.,http://dx.doi.org/10.1093/oxfordjournals.molbev.a026236,http://mbe.oxfordjournals.org/content/17/1/32,Yang and Nielsen (2000),http://biopython.org/DIST/docs/api/Bio.codonalign.codonseq-module.html,"Apr 19, 2016, 8:30:02 AM",5
The request timed out.,http://dx.doi.org/10.1093/oxfordjournals.molbev.a026236,http://mbe.oxfordjournals.org/content/17/1/32,Yang and Nielsen (2000),http://biopython.org/DIST/docs/api/Bio.codonalign.codonseq-module.html,"Apr 19, 2016, 8:30:02 AM",5
400 bad request < 301 moved permanently,http://en.wikipedia.org/wiki/Nick_Matzke%7Cwikipedia,https://en.wikipedia.org/wiki/Nick_Matzke|wikipedia,1,http://biopython.org/wiki/User%3AMatzke,"Apr 19, 2016, 8:30:10 AM",5
A server with the specified hostname could not be found.,http://etal.myweb.uga.edu,,Eric Talevich,http://biopython.org/wiki/Google_Summer_of_Code,"Apr 19, 2016, 8:29:37 AM",4
A server with the specified hostname could not be found.,http://etal.myweb.uga.edu,,Eric Talevich,http://biopython.org/wiki/Google_Summer_of_Code,"Apr 19, 2016, 8:29:37 AM",4
A server with the specified hostname could not be found.,http://etal.myweb.uga.edu,,Eric Talevich,http://biopython.org/wiki/Google_Summer_of_Code,"Apr 19, 2016, 8:29:37 AM",4
A server with the specified hostname could not be found.,http://etal.myweb.uga.edu,,Eric Talevich,http://biopython.org/wiki/Google_Summer_of_Code,"Apr 19, 2016, 8:29:37 AM",4
A server with the specified hostname could not be found.,http://etal.myweb.uga.edu,,Eric Talevich,http://biopython.org/wiki/Google_Summer_of_Code,"Apr 19, 2016, 8:29:37 AM",4
A server with the specified hostname could not be found.,http://etal.myweb.uga.edu,,Eric Talevich,http://biopython.org/wiki/Google_Summer_of_Code,"Apr 19, 2016, 8:29:37 AM",4
A server with the specified hostname could not be found.,http://etal.myweb.uga.edu,,Eric Talevich,http://biopython.org/wiki/Google_Summer_of_Code,"Apr 19, 2016, 8:29:37 AM",4
A server with the specified hostname could not be found.,http://etal.myweb.uga.edu,,UGA personal page,http://biopython.org/wiki/User%3AEricTalevich,"Apr 19, 2016, 8:29:37 AM",4
A server with the specified hostname could not be found.,http://etal.myweb.uga.edu/biopywork.pdf,,PDF,http://biopython.org/wiki/Documentation,"Apr 19, 2016, 8:28:00 AM",2
A server with the specified hostname could not be found.,http://evoviz.nescent.org,,DavidKidd,http://biopython.org/wiki/Active_projects,"Apr 19, 2016, 8:28:46 AM",3
A server with the specified hostname could not be found.,http://evoviz.nescent.org,,DavidKidd,http://biopython.org/wiki/BioGeography,"Apr 19, 2016, 8:28:46 AM",3
A server with the specified hostname could not be found.,http://evoviz.nescent.org,,DavidKidd,http://biopython.org/wiki/BioGeography,"Apr 19, 2016, 8:28:46 AM",3
The request timed out.,http://fisher.berkeley.edu/cteg/members/matzke.html,,Lab page,http://biopython.org/wiki/User%3AMatzke,"Apr 19, 2016, 8:30:10 AM",5
500 internal server error < 301 moved permanently,http://gitcasts.com/posts/git-on-windows,http://wholesaler.safetytechnology.org/posts/git-on-windows,Scott Chacon‰Ûªs screencast on installing msysGit onWindows,http://biopython.org/wiki/GitUsage,"Apr 19, 2016, 8:28:48 AM",3
404 not found < 301 moved permanently,http://github.com/etal/biopython/tree/geography,https://github.com/etal/biopython/tree/geography,anotherbranch,http://biopython.org/wiki/Active_projects,"Apr 19, 2016, 8:28:46 AM",3
404 not found < 301 moved permanently,http://github.com/feeds/biopython/commits/biopython/master,https://github.com/feeds/biopython/commits/biopython/master,RSS,http://biopython.org/wiki/Tracking_commits,"Apr 19, 2016, 8:28:48 AM",3
404 not found < 301 moved permanently,http://github.com/tiagoantao/biopython-popgen-test/tree/master,https://github.com/tiagoantao/biopython-popgen-test/tree/master,http://github.com/tiagoantao/biopython-popgen-test/tree/master,http://biopython.org/wiki/PopGen_dev,"Apr 19, 2016, 8:29:33 AM",4
404 not found < 301 moved permanently,http://github.com/tiagoantao/biopython-popgen-test/tree/master,https://github.com/tiagoantao/biopython-popgen-test/tree/master,http://github.com/tiagoantao/biopython-popgen-test/tree/master,http://biopython.org/wiki/PopGen_dev,"Apr 19, 2016, 8:29:33 AM",4
404 not found < 301 moved permanently,http://github.com/tiagoantao/biopython-popgen-test/tree/stats,https://github.com/tiagoantao/biopython-popgen-test/tree/stats,here,http://biopython.org/wiki/PopGen_dev_Statistics,"Apr 19, 2016, 8:30:06 AM",5
404 not found < 301 moved permanently,http://github.com/tiagoantao/biopython/tree/genepop,https://github.com/tiagoantao/biopython/tree/genepop,http://github.com/tiagoantao/biopython/tree/genepop,http://biopython.org/wiki/PopGen_dev,"Apr 19, 2016, 8:29:33 AM",4
404 not found < 301 moved permanently,http://github.com/tiagoantao/biopython/tree/stats,https://github.com/tiagoantao/biopython/tree/stats,http://github.com/tiagoantao/biopython/tree/stats,http://biopython.org/wiki/PopGen_dev,"Apr 19, 2016, 8:29:33 AM",4
404 not found < 301 moved permanently,http://github.com/yourusername/biopython,https://github.com/yourusername/biopython,http://github.com/yourusername/biopython,http://biopython.org/wiki/GitUsage,"Apr 19, 2016, 8:28:49 AM",3
404 not found,http://hgdownload.cse.ucsc.edu/goldenPath/currentGenomes/Mus_musculus/multiz30way/maf/chr10.maf.gz,,30-way alignment to mousechromosome10,http://biopython.org/wiki/Multiple_Alignment_Format,"Apr 19, 2016, 8:29:33 AM",4
A server with the specified hostname could not be found.,http://imgt.cines.fr/download/LIGM-DB/ftable_doc.html,,http://imgt.cines.fr/download/LIGM-DB/ftable_doc.html,http://biopython.org/DIST/docs/api/Bio.SeqIO.InsdcIO-module.html,"Apr 19, 2016, 8:29:58 AM",5
A server with the specified hostname could not be found.,http://imgt.cines.fr/download/LIGM-DB/userman_doc.html,,http://imgt.cines.fr/download/LIGM-DB/userman_doc.html,http://biopython.org/DIST/docs/api/Bio.SeqIO.InsdcIO-module.html,"Apr 19, 2016, 8:29:58 AM",5
404 not found,http://kim.bio.upenn.edu/~pmagwene/programming.html,,http://kim.bio.upenn.edu/~pmagwene/programming.html,http://biopython.org/wiki/Scriptcentral,"Apr 19, 2016, 8:28:05 AM",2
404 not found,http://mcdb.colorado.edu/courses/6440/index.html,,http://mcdb.colorado.edu/courses/6440/index.html,http://biopython.org/wiki/Documentation,"Apr 19, 2016, 8:27:59 AM",2
404 not found,http://ndbserver.rutgers.edu/NDB/index.html,,http://ndbserver.rutgers.edu/NDB/index.html,http://biopython.org/DIST/docs/api/Bio.Crystal-module.html,"Apr 19, 2016, 8:29:45 AM",5
404 not found,http://news.open-bio.org/news,,news server,http://biopython.org/wiki/News,"Apr 19, 2016, 8:28:01 AM",2
404 not found,http://nmr.chem.uu.nl/~joaor,,http://nmr.chem.uu.nl/~joaor,http://biopython.org/wiki/Participants,"Apr 19, 2016, 8:28:10 AM",2
404 not found,http://nmr.chem.uu.nl/~joaor,,Jọo Rodrigues,http://biopython.org/wiki/Google_Summer_of_Code,"Apr 19, 2016, 8:28:10 AM",2
410 no longer exists,http://pfam.sanger.ac.uk,,http://pfam.sanger.ac.uk/,http://biopython.org/DIST/docs/tutorial/Tutorial.html,"Apr 19, 2016, 8:28:23 AM",3
410 no longer exists,http://pfam.sanger.ac.uk/family?acc=PF05371,,http://pfam.sanger.ac.uk/family?acc=PF05371,http://biopython.org/DIST/docs/tutorial/Tutorial.html,"Apr 19, 2016, 8:28:23 AM",3
410 no longer exists,http://pfam.sanger.ac.uk/family?acc=PF09395,,PF09395Fib_gamma,http://biopython.org/wiki/AlignIO,"Apr 19, 2016, 8:28:41 AM",3
A server with the specified hostname could not be found.,http://polymorphism.scripps.edu/~cabney/MatrixRegression.py.txt,,http://polymorphism.scripps.edu/~cabney/MatrixRegression.py.txt,http://biopython.org/wiki/Scriptcentral,"Apr 19, 2016, 8:28:03 AM",2
The request timed out.,http://rana.lbl.gov,,Michael Eisen,http://biopython.org/DIST/docs/tutorial/Tutorial.html,"Apr 19, 2016, 8:28:28 AM",3
The request timed out.,http://rana.lbl.gov/manuals/ClusterTreeView.pdf,,Michael Eisen‰Ûªs lab website,http://biopython.org/DIST/docs/tutorial/Tutorial.html,"Apr 19, 2016, 8:28:28 AM",3
A server with the specified hostname could not be found.,http://realproxy.charite.de:888,,http://realproxy.charite.de:888,http://biopython.org/DIST/docs/api/Bio.PDB.PDBList%27.PDBList-class.html,"Apr 19, 2016, 8:30:05 AM",5
A server with the specified hostname could not be found.,http://realproxy.charite.de:888,,http://realproxy.charite.de:888,http://biopython.org/DIST/docs/api/Bio.PDB.PDBList'.PDBList-class.html,"Apr 19, 2016, 8:30:05 AM",5
404 not found,http://sage.math.washington.edu/tmp/sage-2.8.12.alpha0/doc/prog/node36.html,,Sage programmingguide,http://biopython.org/wiki/GSOC2011_Mocapy,"Apr 19, 2016, 8:30:06 AM",5
404 not found < 301 moved permanently,http://sbcb.bioch.ox.ac.uk/oliver/software/GromacsWrapper/html/edpdb.html,http://sbcb.bioch.ox.ac.uk/users/oliver/software/GromacsWrapper/html/edpdb.html,edPDB,http://biopython.org/wiki/Reading_large_PDB_files,"Apr 19, 2016, 8:29:35 AM",4
404 not found < 301 moved permanently,http://sbcb.bioch.ox.ac.uk/oliver/software/GromacsWrapper/html/edpdb.html,http://sbcb.bioch.ox.ac.uk/users/oliver/software/GromacsWrapper/html/edpdb.html,edPDB,http://biopython.org/wiki/GSOC2010_Joao,"Apr 19, 2016, 8:29:35 AM",4
404 not found,http://socghop.appspot.com/program/home/google/gsoc2009,,Google Summer of Code2009,http://biopython.org/wiki/BioGeography,"Apr 19, 2016, 8:29:39 AM",4
404 not found,http://socghop.appspot.com/program/home/google/gsoc2009,,Google Summer of Code2009,http://biopython.org/wiki/BioGeography,"Apr 19, 2016, 8:29:39 AM",4
404 not found,http://socghop.appspot.com/student_project/show/google/gsoc2009/nescent/t124022798250,,Biogeographical Phylogenetics forBioPython,http://biopython.org/wiki/Active_projects,"Apr 19, 2016, 8:28:45 AM",3
404 not found,http://socghop.appspot.com/student_project/show/google/gsoc2009/nescent/t124022798250,,Biogeographical Phylogenetics forBioPython,http://biopython.org/wiki/BioGeography,"Apr 19, 2016, 8:28:45 AM",3
404 not found,http://socghop.appspot.com/student_project/show/google/gsoc2009/nescent/t124022798250,,Biogeographical Phylogenetics forBioPython,http://biopython.org/wiki/BioGeography,"Apr 19, 2016, 8:28:45 AM",3
A server with the specified hostname could not be found.,http://spice.cc.utexas.edu/~grouse,,http://spice.cc.utexas.edu/~grouse/,http://biopython.org/wiki/Participants,"Apr 19, 2016, 8:28:10 AM",2
404 not found,http://starship.python.net/crew/hinsen/MMTK,,http://starship.python.net/crew/hinsen/MMTK/,http://biopython.org/DIST/docs/tutorial/Tutorial.html,"Apr 19, 2016, 8:28:26 AM",3
404 not found,http://starship.python.net/crew/hinsen/MMTK,,http://starship.python.net/crew/hinsen/MMTK/,http://biopython.org/wiki/The_Biopython_Structural_Bioinformatics_FAQ,"Apr 19, 2016, 8:28:26 AM",3
404 not found < 301 moved permanently,http://swaroopch.info/text/Byte_of_Python:Main_Page,http://www.swaroopch.info/text/Byte_of_Python:Main_Page,A Byte ofPython,http://biopython.org/wiki/Getting_Started,"Apr 19, 2016, 8:28:20 AM",3
A server with the specified hostname could not be found.,http://thomas.pelletier.im/2010/02/dijkstras-algorithm-python-implementation,,http://thomas.pelletier.im/2010/02/dijkstras-algorithm-python-implementation/,http://biopython.org/DIST/docs/api/Bio.codonalign.codonalignment-module.html,"Apr 19, 2016, 8:30:01 AM",5
404 not found,http://viscose.ifg.uni-muenster.de/html/alphabets.html,,http://viscose.ifg.uni-muenster.de/html/alphabets.html,http://biopython.org/DIST/docs/api/Bio.Alphabet.Reduced-module.html,"Apr 19, 2016, 8:29:44 AM",5
404 not found,http://wbiomed.curtin.edu.au/genepop/help_input.html,,http://wbiomed.curtin.edu.au/genepop/help_input.html,http://biopython.org/DIST/docs/api/Bio.PopGen.GenePop-module.html,"Apr 19, 2016, 8:29:54 AM",5
404 not found,http://wbiomed.curtin.edu.au/genepop/help_input.html,,http://wbiomed.curtin.edu.au/genepop/help_input.html,http://biopython.org/DIST/docs/api/Bio.PopGen.GenePop.FileParser-module.html,"Apr 19, 2016, 8:29:54 AM",5
404 not found < 302 found,http://wiki.binf.ku.dk/User:Thomas_Hamelryck,http://www.binf.ku.dk/User:Thomas_Hamelryck,Thomas Hamelryck,http://biopython.org/wiki/Google_Summer_of_Code,"Apr 19, 2016, 8:29:37 AM",4
404 not found < 302 found,http://wiki.binf.ku.dk/User:Thomas_Hamelryck,http://www.binf.ku.dk/User:Thomas_Hamelryck,Thomas Hamelryck,http://biopython.org/wiki/Google_Summer_of_Code,"Apr 19, 2016, 8:29:37 AM",4
404 not found < 302 found,http://wiki.binf.ku.dk/User:Thomas_Hamelryck,http://www.binf.ku.dk/User:Thomas_Hamelryck,Thomas Hamelryck,http://biopython.org/wiki/Google_Summer_of_Code,"Apr 19, 2016, 8:29:37 AM",4
A server with the specified hostname could not be found.,http://www.apparatusproject.org/blog/2009/06/github-and-buildbot-continuous-integration,,github/buildbotintegration,http://biopython.org/wiki/Continuous_integration,"Apr 19, 2016, 8:29:40 AM",4
404 not found,http://www.binf.ku.dk/users/thamelry,,http://www.binf.ku.dk/users/thamelry,http://biopython.org/wiki/Participants,"Apr 19, 2016, 8:28:09 AM",2
404 not found,http://www.binf.ku.dk/users/thamelry/references.html,,Bioinformatics journalwebsite,http://biopython.org/wiki/The_Biopython_Structural_Bioinformatics_FAQ,"Apr 19, 2016, 8:28:41 AM",3
404 not found,http://www.bioconductor.org/packages/bioc/html/GEOquery.html,,SeanDavis‰Ûª GEOquery parser inR/Bioconductor,http://biopython.org/wiki/Active_projects,"Apr 19, 2016, 8:28:47 AM",3
500 internal server error,http://www.bioperl.org/wiki/HOWTO:SearchIO,,BioPerlSearchIO HOWTO,http://biopython.org/wiki/SearchIO,"Apr 19, 2016, 8:30:06 AM",5
500 internal server error,http://www.bioperl.org/wiki/Stockholm_multiple_alignment_format,,http://www.bioperl.org/wiki/Stockholm_multiple_alignment_format,http://biopython.org/DIST/docs/api/Bio.AlignIO.StockholmIO.StockholmIterator-class.html,"Apr 19, 2016, 8:30:05 AM",5
500 internal server error,http://www.bioperl.org/wiki/Using_CVS,,BioPerl‰Ûªs CVS wikipage,http://biopython.org/wiki/CVS,"Apr 19, 2016, 8:28:50 AM",3
404 not found < 301 moved permanently,http://www.biopython.org/DIST/docs/cookbook/biopdb_faq.pdf,http://biopython.org/DIST/docs/cookbook/biopdb_faq.pdf,FAQ,http://biopython.org/wiki/GSOC2010_Joao,"Apr 19, 2016, 8:29:35 AM",4
500 internal server error < 301 moved permanently,http://www.biosql.org,http://www.biosql.org/wiki/Main_Page,BioSQL,http://biopython.org/DIST/docs/tutorial/Tutorial.html,"Apr 19, 2016, 8:28:29 AM",3
500 internal server error,http://www.biosql.org/wiki/Annotation_Mapping,,Annotation Mapping,http://biopython.org/wiki/BioSQL,"Apr 19, 2016, 8:28:44 AM",3
500 internal server error,http://www.biosql.org/wiki/Downloads,,BioSQL downloads,http://biopython.org/wiki/BioSQL,"Apr 19, 2016, 8:28:43 AM",3
500 internal server error,http://www.biosql.org/wiki/Main_Page,,BioSQL,http://biopython.org/wiki/BioSQL,"Apr 19, 2016, 8:28:43 AM",3
500 internal server error,http://www.biosql.org/wiki/Schema_Overview,,http://www.biosql.org/wiki/Schema_Overview,http://biopython.org/DIST/docs/biosql/python_biosql_basic.html,"Apr 19, 2016, 8:28:42 AM",3
500 internal server error,http://www.biosql.org/wiki/Schema_Overview,,SchemaOverview,http://biopython.org/wiki/BioSQL,"Apr 19, 2016, 8:28:42 AM",3
A server with the specified hostname could not be found.,http://www.botany.uga.edu/courses/bioinformatics/current/index.html,,http://www.botany.uga.edu/courses/bioinformatics/current/index.html,http://biopython.org/wiki/Participants,"Apr 19, 2016, 8:28:09 AM",2
404 not found,http://www.cbs.dtu.dk/staff/thomas/pyphy,,http://www.cbs.dtu.dk/staff/thomas/pyphy/,http://biopython.org/wiki/Scriptcentral,"Apr 19, 2016, 8:28:04 AM",2
A server with the specified hostname could not be found.,http://www.cgb.ki.se/cgb/groups/sonnhammer/Stockholm.html,,http://www.cgb.ki.se/cgb/groups/sonnhammer/Stockholm.html,http://biopython.org/DIST/docs/api/Bio.AlignIO.StockholmIO.StockholmIterator-class.html,"Apr 19, 2016, 8:30:05 AM",5
404 not found,http://www.clcbio.com/manual/genomics/Quality_abif_trimming.html,,http://www.clcbio.com/manual/genomics/Quality_abif_trimming.html,http://biopython.org/DIST/docs/api/Bio.SeqIO.AbiIO-module.html,"Apr 19, 2016, 8:29:57 AM",5
A server with the specified hostname could not be found.,http://www.cmbi.kun.nl/bioinf/tools/crab_pir.html,,http://www.cmbi.kun.nl/bioinf/tools/crab_pir.html,http://biopython.org/DIST/docs/api/Bio.SeqIO.PirIO-module.html,"Apr 19, 2016, 8:29:58 AM",5
A server with the specified hostname could not be found.,http://www.cmbi.kun.nl/gv/dssp,,http://www.cmbi.kun.nl/gv/dssp/,http://biopython.org/DIST/docs/tutorial/Tutorial.html,"Apr 19, 2016, 8:28:25 AM",3
A server with the specified hostname could not be found.,http://www.cmbi.kun.nl/gv/dssp,,http://www.cmbi.kun.nl/gv/dssp/,http://biopython.org/wiki/The_Biopython_Structural_Bioinformatics_FAQ,"Apr 19, 2016, 8:28:25 AM",3
404 not found,http://www.ebc.uu.se/systzoo/research/diva/manual/dmanual.html,,DIVA,http://biopython.org/wiki/BioGeography,"Apr 19, 2016, 8:29:39 AM",4
404 not found,http://www.ebi.ac.uk/help/pir_frame.html,,http://www.ebi.ac.uk/help/pir_frame.html,http://biopython.org/DIST/docs/api/Bio.SeqIO.PirIO-module.html,"Apr 19, 2016, 8:29:58 AM",5
404 not found,http://www.ebi.ac.uk/Wise2,,Wise2,http://biopython.org/wiki/Download,"Apr 19, 2016, 8:28:12 AM",2
404 not found < 301 moved permanently,http://www.embl-heidelberg.de/~chenna/PySAT,http://www.embl.de/~chenna/PySAT,http://www.embl-heidelberg.de/~chenna/PySAT/,http://biopython.org/wiki/Scriptcentral,"Apr 19, 2016, 8:28:04 AM",2
404 not found < 301 moved permanently,http://www.embl-heidelberg.de/~vogt/matrices/mlist1.html,http://www.embl.de/~vogt/matrices/mlist1,http://www.embl-heidelberg.de/~vogt/matrices/mlist1.html,http://biopython.org/DIST/docs/api/Bio.SubsMat.MatrixInfo-module.html,"Apr 19, 2016, 8:30:00 AM",5
404 not found < 302 found,http://www.expasy.ch/expasy_urls.html,http://www.expasy.org/expasy_urls.html,http://www.expasy.ch/expasy_urls.html,http://biopython.org/DIST/docs/api/Bio.ExPASy-module.html,"Apr 19, 2016, 8:29:46 AM",5
301 moved permanently < 302 found,http://www.expasy.org/cgi-bin/sprot-search-de,http://web.expasy.org/cgi-bin/unavailable.cgi?type=redirect&query=sprot-search-de,http://www.expasy.org/cgi-bin/sprot-search-de,http://biopython.org/DIST/docs/tutorial/Tutorial.html,"Apr 19, 2016, 8:28:24 AM",3
301 moved permanently < 302 found,http://www.expasy.org/cgi-bin/sprot-search-ful,http://web.expasy.org/cgi-bin/unavailable.cgi?type=redirect&query=sprot-search-ful,http://www.expasy.org/cgi-bin/sprot-search-ful,http://biopython.org/DIST/docs/tutorial/Tutorial.html,"Apr 19, 2016, 8:28:24 AM",3
A server with the specified hostname could not be found.,http://www.gentoo-portage.com,,Gentoo-Portage,http://biopython.org/wiki/Download,"Apr 19, 2016, 8:28:13 AM",2
A server with the specified hostname could not be found.,http://www.gentoo-portage.com/sci-biology/biopython,,Here,http://biopython.org/wiki/Download,"Apr 19, 2016, 8:28:13 AM",2
401 unauthorized,http://www.nature.com/nrg/journal/v7/n10/full/nrg1904.html,,http://www.nature.com/nrg/journal/v7/n10/full/nrg1904.html,http://biopython.org/wiki/PopGen_dev_Statistics,"Apr 19, 2016, 8:30:05 AM",5
410 no longer exists,http://www.ncbi.nlm.nih.gov/books/NBK47537,,SFF,http://biopython.org/wiki/SeqIO,"Apr 19, 2016, 8:28:42 AM",3
404 not found,http://www.ncbi.nlm.nih.gov/entrez/utils/utils_index.html,,http://www.ncbi.nlm.nih.gov/entrez/utils/utils_index.html,http://biopython.org/DIST/docs/api/Bio.Entrez-module.html,"Apr 19, 2016, 8:29:45 AM",5
A server with the specified hostname could not be found.,http://www.oligopython.org,,http://www.oligopython.org,http://biopython.org/wiki/Participants,"Apr 19, 2016, 8:28:10 AM",2
404 not found < 301 moved permanently,http://www.pasteur.fr/formation/infobio/python,http://www.pasteur.fr/en/formation/infobio/python,http://www.pasteur.fr/formation/infobio/python/,http://biopython.org/wiki/Documentation,"Apr 19, 2016, 8:28:00 AM",2
404 not found < 301 moved permanently,http://www.pasteur.fr/recherche/unites/Binfs,http://www.pasteur.fr/en/recherche/unites/Binfs,http://www.pasteur.fr/recherche/unites/Binfs/,http://biopython.org/wiki/Scriptcentral,"Apr 19, 2016, 8:28:04 AM",2
404 not found < 301 moved permanently,http://www.pasteur.fr/recherche/unites/sis/Pise,http://www.pasteur.fr/en/recherche/unites/sis/Pise,http://www.pasteur.fr/recherche/unites/sis/Pise/#pisepython,http://biopython.org/wiki/Scriptcentral,"Apr 19, 2016, 8:28:04 AM",2
404 not found,http://www.phylosoft.org/archaeopteryx,,Archaopteryx,http://biopython.org/wiki/PhyloXML,"Apr 19, 2016, 8:29:32 AM",4
404 not found,http://www.phylosoft.org/forester,,Forester,http://biopython.org/wiki/PhyloXML,"Apr 19, 2016, 8:29:32 AM",4
404 not found,http://www.python.org/doc/current/inst/inst.html,,C compiler (if compilingfrom source),http://biopython.org/wiki/Download,"Apr 19, 2016, 8:28:11 AM",2
404 not found,http://www.python.org/doc/essays/styleguide.html,,Python StyleGuide,http://biopython.org/wiki/Contributing,"Apr 19, 2016, 8:28:47 AM",3
404 not found,http://www.python.org/doc/faq,,http://www.python.org/doc/faq/,http://biopython.org/DIST/docs/tutorial/Tutorial.html,"Apr 19, 2016, 8:28:21 AM",3
404 not found,http://www.python.org/doc/lib/module-urllib.html,,urllib documentation,http://biopython.org/DIST/docs/tutorial/Tutorial.html,"Apr 19, 2016, 8:28:24 AM",3
404 not found < 301 moved permanently,http://www.reportlab.org/downloads.html,https://www.reportlab.com/downloads.html,ReportLab,http://biopython.org/wiki/Download,"Apr 19, 2016, 8:28:11 AM",2
404 not found < 301 moved permanently,http://www.reportlab.org/downloads.html,https://www.reportlab.com/downloads.html,http://www.reportlab.org/downloads.html,http://biopython.org/DIST/docs/install/Installation.html,"Apr 19, 2016, 8:28:11 AM",2
The request timed out.,http://www.rubic.rdg.ac.uk/~mab/software.html,,FDist,http://biopython.org/wiki/Download,"Apr 19, 2016, 8:28:12 AM",2
The request timed out.,http://www.rubic.rdg.ac.uk/~mab/software.html,,fdist2,http://biopython.org/wiki/PopGen,"Apr 19, 2016, 8:28:12 AM",2
The request timed out.,http://www.rubic.rdg.ac.uk/~mab/software.html,,http://www.rubic.rdg.ac.uk/~mab/software.html,http://biopython.org/DIST/docs/api/Bio.PopGen.FDist-module.html,"Apr 19, 2016, 8:28:12 AM",2
The request timed out.,http://www.rubic.rdg.ac.uk/~mab/software.html,,http://www.rubic.rdg.ac.uk/~mab/software.html,http://biopython.org/DIST/docs/api/Bio.PopGen.FDist.Controller-module.html,"Apr 19, 2016, 8:28:12 AM",2
The request timed out.,http://www.scipy.org/RecordArrays,,record array,http://biopython.org/wiki/Phylo_cookbook,"Apr 19, 2016, 8:29:33 AM",4
404 not found,http://www.sinauer.com/detail.php?id=1775,,Inferring Phylogenies,http://biopython.org/wiki/Google_Summer_of_Code,"Apr 19, 2016, 8:29:38 AM",4
404 not found,http://www.unc.edu/~nghoffma/software.html,,http://www.unc.edu/~nghoffma/software.html,http://biopython.org/wiki/Scriptcentral,"Apr 19, 2016, 8:28:05 AM",2
404 not found,http://www.uni-kl.de/wcms/ag-kauff.html,,http://www.uni-kl.de/wcms/ag-kauff.html,http://biopython.org/wiki/Participants,"Apr 19, 2016, 8:28:10 AM",2
404 not found,http://www.uniprot.org/uniprot/XXX.txt,,http://www.uniprot.org/uniprot/XXX.txt,http://biopython.org/DIST/docs/api/Bio.ExPASy-module.html,"Apr 19, 2016, 8:29:45 AM",5
404 not found,http://www.wwpdb.org/documentation/format23/sect3.html,,http://www.wwpdb.org/documentation/format23/sect3.html,http://biopython.org/DIST/docs/api/Bio.SeqIO.PdbIO-module.html,"Apr 19, 2016, 8:29:58 AM",5
404 not found,http://www.wwpdb.org/documentation/format32/sect9.html,,ATOM,http://biopython.org/wiki/Reading_large_PDB_files,"Apr 19, 2016, 8:29:34 AM",4
404 not found,http://www.wwpdb.org/documentation/format32/sect9.html,,HETATM,http://biopython.org/wiki/Reading_large_PDB_files,"Apr 19, 2016, 8:29:34 AM",4
404 not found,http://www.wwpdb.org/documentation/format32/v3.2.html,,legalPDB format,http://biopython.org/wiki/Reading_large_PDB_files,"Apr 19, 2016, 8:29:34 AM",4
404 not found,http://www.ysbl.york.ac.uk/~emsley/coot,,http://www.ysbl.york.ac.uk/~emsley/coot/,http://biopython.org/DIST/docs/tutorial/Tutorial.html,"Apr 19, 2016, 8:28:25 AM",3
404 not found,http://www.ysbl.york.ac.uk/~emsley/coot,,http://www.ysbl.york.ac.uk/~emsley/coot/,http://biopython.org/wiki/The_Biopython_Structural_Bioinformatics_FAQ,"Apr 19, 2016, 8:28:25 AM",3
404 not found,http://www.ysbl.york.ac.uk/~lizp/molgraphics.html,,http://www.ysbl.york.ac.uk/~lizp/molgraphics.html,http://biopython.org/DIST/docs/tutorial/Tutorial.html,"Apr 19, 2016, 8:28:25 AM",3
404 not found,http://www.ysbl.york.ac.uk/~lizp/molgraphics.html,,http://www.ysbl.york.ac.uk/~lizp/molgraphics.html,http://biopython.org/wiki/The_Biopython_Structural_Bioinformatics_FAQ,"Apr 19, 2016, 8:28:25 AM",3
404 not found,https://www.nescent.org/wg_phyloinformatics/Phyloinformatics_Summer_of_Code_2009,,Phyloinformatics Summer of Code2009,http://biopython.org/wiki/Active_projects,"Apr 19, 2016, 8:28:45 AM",3
404 not found,https://www.nescent.org/wg_phyloinformatics/Phyloinformatics_Summer_of_Code_2009,,Phyloinformatics Summer of Code2009,http://biopython.org/wiki/BioGeography,"Apr 19, 2016, 8:28:45 AM",3
404 not found,https://www.nescent.org/wg_phyloinformatics/Phyloinformatics_Summer_of_Code_2009,,Phyloinformatics Summer of Code2009,http://biopython.org/wiki/BioGeography,"Apr 19, 2016, 8:28:45 AM",3
404 not found,https://www.nescent.org/wg_phyloinformatics/Phyloinformatics_Summer_of_Code_2009,,Google/Phyloinformatics Summer of Code2009,http://biopython.org/wiki/User%3AMatzke,"Apr 19, 2016, 8:28:45 AM",3
404 not found,https://www.nescent.org/wg_phyloinformatics/Phyloinformatics_Summer_of_Code_2009,,Biogeographical Phylogenetics forBioPython,http://biopython.org/wiki/User%3AMatzke,"Apr 19, 2016, 8:28:45 AM",3
404 not found,https://www.nescent.org/wg_phyloinformatics/PhyloSoC:Biopython_support_for_parsing_and_writing_phyloXML,,PhyloSoC:Biopythonsupport for parsing and writingphyloXML,http://biopython.org/wiki/PhyloXML,"Apr 19, 2016, 8:29:32 AM",4
unsupported URL,obf:OBF,,Open Bioinformatics Foundation,http://biopython.org/wiki/News,"Apr 19, 2016, 8:28:01 AM",2
unsupported URL,svn://code.open-bio.org/biosql/biosql-schema,,svn://code.open-bio.org/biosql/biosql-schema,http://biopython.org/DIST/docs/biosql/python_biosql_basic.html,"Apr 19, 2016, 8:28:42 AM",3
unsupported URL,wp:RSS_(file_format),,RSS,http://biopython.org/wiki/SourceCode,"Apr 19, 2016, 8:28:05 AM",2
unsupported URL,wp:RSS_(file_format),,RSSfeeds,http://biopython.org/wiki/Tracking_commits,"Apr 19, 2016, 8:28:05 AM",2
unsupported URL,wp:RSS_(file_format),,RSS,http://biopython.org/wiki/CVS,"Apr 19, 2016, 8:28:05 AM",2
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