[Biopython (old issues only) - Feature #3460] Enhancement: network analysis tool PyPanda
| Newsgroups | gmane.comp.python.bio.devel |
|---|---|
| Message-ID | <redmine.journal-15279.20160422081011.740f9022828dcb4f@redmine.open-bio.org> |
Issue #3460 has been updated by Peter Cock. See also https://github.com/biopython/biopython/issues/814 ---------------------------------------- Feature #3460: Enhancement: network analysis tool PyPanda https://redmine.open-bio.org/issues/3460#change-15279 * Author: David van IJzendoorn * Status: Migrated * Priority: Normal * Assignee: Biopython Dev Mailing List * Category: Other * Target version: 1.64 * URL: https://github.com/davidvi/pypanda ---------------------------------------- http://dx.doi.org/10.1371/journal.pone.0064832 PANDA (Passing Attributes between Networks for Data Assimilation) is a gene regulatory network inference method that uses message-passing to integrate multiple sources of 'omics data. PANDA was first released in C++ but now we've created a python implementation of the PANDA algorithm that is both faster than the C++ version (because we now use matrix operations) and has more features. https://github.com/davidvi/pypanda Would you be interested in adding pypanda to biopython? I would be willing to maintain the code. -- You have received this notification because you have either subscribed to it, or are involved in it. To change your notification preferences, please click here and login: http://redmine.open-bio.org _______________________________________________ Biopython-dev mailing list [email protected] http://mailman.open-bio.org/mailman/listinfo/biopython-dev