Re: Preparing for Biopython 1.67
Peter Cock <[email protected]>
| Newsgroups | gmane.comp.python.bio.devel |
|---|---|
| Message-ID | <CAKVJ-_61v+Em6AoaGet3kZBWuoJJKiEuKtT7872B2Fqy2rDWgg@mail.gmail.com> |
The blog post is live, let me know if there are any typos: https://news.open-bio.org/2016/06/08/biopython-1-67-released/ Tweeted: https://twitter.com/Biopython/status/740599642920980480 Peter On Wed, Jun 8, 2016 at 5:42 PM, Peter Cock <[email protected]> wrote: > Hello all, > > I've done the 32bit Windows installers for the older versions of > Python, and they and the source releases are live via: > > http://biopython.org/wiki/Download > > Ben - could you do the 32bit Windows installers for Python 3.5 again > please? Getting them to me by email is fine, or you can try forking the > DIST repository and doing it via a pull request if that seems easier: > > https://github.com/biopython/DIST > > Still to do: Release announcement for emailing and the OBF blog: > Would anyone volunteer to draft this while I have dinner? > > https://news.open-bio.org/category/obf-projects/biopython/ > > Thanks, > > Peter > > On Wed, Jun 8, 2016 at 3:38 PM, Peter Cock <[email protected]> wrote: >> This is live on PyPI now: >> >> https://pypi.python.org/pypi/biopython/ >> >> If anyone could test that now for any last minute issues, please >> do so. >> >> I still need to do the Windows installers and our own download page, >> then the release announcement for emailing and the OBF blog. >> >> Peter >> >> On Wed, Jun 8, 2016 at 11:20 AM, Peter Cock <[email protected]> wrote: >>> Another update, I've sorted out most of the warnings from the >>> test suite, although there are some open issues here: >>> >>> https://github.com/biopython/biopython/issues/838 >>> https://github.com/biopython/biopython/issues/845 >>> >>> For reasons unknown, the BioSQL SQLite tests are now regularly >>> failing under Python 2.6 on my old Windows XP machine, e.g. >>> >>> http://testing.open-bio.org/biopython/builders/Windows%20XP%20-%20Python%202.6/builds/657/steps/shell/logs/stdio >>> >>> This turned out to be unrelated to the recent minor changes to >>> how the BioSQL tests are configured - even a clean re-install of >>> Biopython 1.66 fails - and is frustratingly random. I'm giving up >>> on this - there is probably a handle leak somewhere but since >>> this seems to be Python 2.6 specific so it does not seem to be >>> that important. >>> >>> I'm going to try to do the release this afternoon - so please >>> don't commit anything to the master branch for the time >>> being. >>> >>> Thanks, >>> >>> Peter >>> >>> On Fri, Jun 3, 2016 at 5:15 PM, Peter Cock <[email protected]> wrote: >>>> Hello again, >>>> >>>> That time plan failed due to the sudden need to do the website migration. >>>> >>>> However, if you've been watching the commits on GitHub you might >>>> have guessed from things like cleaning up the warnings from the test >>>> suite, recently I've been focusing on getting ready for Biopython 1.67. >>>> >>>> It may be tempting fate, but I hope to do the release next week - >>>> and in the process update the instructions where needed due to >>>> the website move to GitHub pages: >>>> >>>> http://biopython.org/wiki/Building_a_release >>>> >>>> On a related note, does anyone have any thoughts on how we >>>> have been tagging the releases so far in git? i.e. annotated tags >>>> versus the currently used "lightweight tags", see: >>>> >>>> https://github.com/biopython/biopython.github.io/issues/56 >>>> >>>> Thanks, >>>> >>>> Peter