[Biopython (old issues only) - Bug #2698] (Resolved) Attempt at a unit test for MaxEntrophy

[email protected] Wed, 09 Nov 2016 10:01:33 +0000
Newsgroups gmane.comp.python.bio.devel
Message-ID <redmine.journal-15341.20161109100132.c5b56e00f09c3f3d@redmine.open-bio.org>
Issue #2698 has been updated by Peter Cock.

Description updated
Status changed from New to Resolved
% Done changed from 0 to 100

OK, marking as resolved. Thanks all.

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Bug #2698: Attempt at a unit test for MaxEntrophy
https://redmine.open-bio.org/issues/2698#change-15341

* Author: Bruce Southey
* Status: Resolved
* Priority: Normal
* Assignee: Biopython Dev Mailing List
* Category: Unit Tests
* Target version: Not Applicable
* URL: 
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I used test_LogisticRegression.py to develop a test for MaxEntrophy. However, I could not get MaxEntrophy to train on that dataset. Indeed I have found it to be very sensitive to both data and functions making it extremely hard to develop bioinformatics-based data and associated test. So in the end I generated data based on some of my work. 

I trained the model outside the tests because I do not know how to avoid retraining the model for each test.

---Files--------------------------------
test_MaxEntrophy.py (3.28 KB)


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