Thoughts on NN module
Adil Iqbal <[email protected]> Wed, 7 Jun 2017 11:18:48 -0500
| Newsgroups | gmane.comp.python.bio.devel |
|---|---|
| Message-ID | <CABJ4Pd+Aeg5r+2iK+nqpTdez3N3g79H3Ky0SVjO-kQ1LOt23eg@mail.gmail.com> |
Hey guys, I wanted to try and save the machine learning module somehow, but based on the *varied applications of machine learning <https://academic.oup.com/bib/article/doi/10.1093/bib/bbk007/264025/Machine-learning-in-bioinformatics>* in bioinformatics, really the best package to use is *scikit-learn <http://scikit-learn.org/stable/>*. It covers everything from Bayesian networks, hierarchical clustering, decision trees, etc. I suppose biopython could offer pre-built, easily modified networks for the most common use-cases, that is, protein folding and gene pattern recognition. Though we would need to use scikit-learn (or other machine learning package) as a dependency. Another option would be to scrap the machine learning suite and focus more on data management. Best, Adil _______________________________________________ Biopython-dev mailing list [email protected] http://mailman.open-bio.org/mailman/listinfo/biopython-dev