Re: Biopython 1.70 release
Peter Cock <[email protected]> Tue, 11 Jul 2017 10:30:32 +0100
| Newsgroups | gmane.comp.python.bio.devel |
|---|---|
| Message-ID | <CAKVJ-_6yOQLGH3S26ofJRJqpxQQV+6Z3Y0aJxHm0+LOH5XZUjw@mail.gmail.com> |
We have one confirmation via Twitter, from Ishwar Hosamani: "Installed correctly on MacOS 10.11.6 with python 3.6.1. Ran a few tests from the tests folder and they all passed." https://twitter.com/ishwarvh/status/884628886453190657 Peter On Tue, Jul 11, 2017 at 10:21 AM, Peter Cock <[email protected]> wrote: > Great - I'll delay the PyPI upload and announcement until > at least one person confirms the zip/tar-ball works for an > install from source. > > Thanks, > > Peter > > On Tue, Jul 11, 2017 at 9:06 AM, Mateusz Korycinski > <[email protected]> wrote: >> >> Hi, >> >> I can also test that on both Mac and Linux. >> >> Best regards, >> Mateusz Korycinski >> >> Sent with ProtonMail Secure Email. >> >> -------- Original Message -------- >> Subject: Re: [Biopython-dev] Biopython 1.70 release >> Local Time: July 10, 2017 6:56 PM >> UTC Time: July 10, 2017 4:56 PM >> From: [email protected] >> To: Sourav Singh <[email protected]> >> Biopython-Dev Mailing List <[email protected]> >> >> Thanks for the offer Sourav, but Ben Fulton is happy to do >> the Windows installers again for Biopython 1.70. >> >> It would however be great if you could download the zip file >> (or tar-ball), and attempt to installing it from source and run >> the tests (on Windows, Linux or Mac). >> >> e.g. >> >> wget http://biopython.org/DIST/biopython-1.70.zip >> unzip biopython-1.70.zip >> cd biopython-1.70 >> pip install . >> cd Tests >> python run_tests.py >> >> Thanks, >> >> Peter >> >> On Mon, Jul 10, 2017 at 5:47 PM, Sourav Singh <[email protected]> >> wrote: >>> >>> Hello, >>> >>> I can help with the testing of the gzipped code and creation of Windows >>> installers for Biopython 1.70. >>> >>> Regards, >>> >>> Sourav >>> >>> On Jul 10, 2017 9:59 PM, "Peter Cock" <[email protected]> wrote: >>>> >>>> Hi Ben, >>>> >>>> While in the not too distant future I am hoping to adopt the >>>> NumPy approach to building wheels (and installers?) [1], >>>> it would be much appreciated if you could make all the >>>> Windows installers for Biopython 1.70. >>>> >>>> (In particular Python 3.6, but if possible also Python 2.7, >>>> 3.4 and 3.5 - we no longer support Python 3.3) >>>> >>>> Now that we have Windows-based continuous integration >>>> up and running on AppVeyor [2], I didn't feel it necessary >>>> to bother you in advance about running the unit tests. >>>> >>>> Much obliged, >>>> >>>> Peter >>>> >>>> [1] >>>> http://mailman.open-bio.org/pipermail/biopython-dev/2017-July/021817.html >>>> >>>> [2] >>>> http://mailman.open-bio.org/pipermail/biopython-dev/2017-June/021797.html >>>> https://ci.appveyor.com/project/biopython/biopython/history >>>> >>>> >>>> On Mon, Jul 10, 2017 at 4:43 PM, Peter Cock <[email protected]> >>>> wrote: >>>> > Hello all, >>>> > >>>> > I'd like to delay the PyPI upload and official release announcement >>>> > until >>>> > someone else has confirmed they could install this - any volunteers? >>>> > >>>> > http://biopython.org/DIST/biopython-1.70.tar.gz >>>> > http://biopython.org/DIST/biopython-1.70.zip >>>> > Checksums: >>>> > >>>> > $ md5sum biopython-1.70.* >>>> > feff7a3e2777e43f9b13039b344e06ff biopython-1.70.tar.gz >>>> > 6307ab27c257fe69b9dae4bfc3052f49 biopython-1.70.zip >>>> > >>>> > $ sha256sum biopython-1.70.* >>>> > 4a7c5298f03d1a45523f32bae1fffcff323ea9dce007fb1241af092f5ab2e45b >>>> > biopython-1.70.tar.gz >>>> > 34312ce899f6c3fc9dea77ca997f9a8c228043d05284a0653577594aeb119d4f >>>> > biopython-1.70.zip >>>> > >>>> > These are from this tagged commit on the main repository: >>>> > >>>> > https://github.com/biopython/biopython/tree/biopython-170 >>>> > >>>> > https://github.com/biopython/biopython/commit/4d01a84f0aa8f91863075f7f0f074b4b69e53959 >>>> > >>>> > The revised documentation is already live: >>>> > >>>> > http://biopython.org/DIST/docs/api/ >>>> > http://biopython.org/DIST/docs/tutorial/Tutorial.pdf >>>> > http://biopython.org/DIST/docs/tutorial/Tutorial.html >>>> > etc >>>> > >>>> > Peter >>>> > >>>> > On Mon, Jul 10, 2017 at 2:19 PM, Peter Cock >>>> > <[email protected]> wrote: >>>> >> Thanks everyone who helped recently with resolving >>>> >> open issues and pull requests - especially Eric who >>>> >> did lots last week. >>>> >> >>>> >> I'm going to try the release this afternoon, so please >>>> >> consider the mast branch frozen for the time being. >>>> >> >>>> >> Thanks, >>>> >> >>>> >> Peter >>>> _______________________________________________ >>>> Biopython-dev mailing list >>>> [email protected] >>>> http://mailman.open-bio.org/mailman/listinfo/biopython-dev > >