Re: [Biopython] Fw: Developing a wrapper for EBI dbfetch
Peter Cock <[email protected]> Tue, 15 Aug 2017 16:39:55 +0100
| Newsgroups | gmane.comp.python.bio.devel,gmane.comp.python.bio.general |
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| Message-ID | <CAKVJ-_6PMOgM9smgmimh5_u57=p4dyYFyxHe4hv4qzpaeKNdXw@mail.gmail.com> |
Would anyone like to comment on Francesco's pull request: https://github.com/biopython/biopython/pull/1298 This is to add a wrapper for EBI's dbfetch, originally logged as: https://github.com/biopython/biopython/issues/443 Thanks, Peter On Wed, Jun 21, 2017 at 12:06 PM, Peter Cock <[email protected]> wrote: > CC biopython-dev for the module naming in particular. > > General feedback or ideas about supporting the EBI's web-interface > (their REST API, similar to the NCBI's Entrez utilities, or TogoWS) > are welcome here or on the GitHub issue: > > https://github.com/biopython/biopython/issues/443 > > Peter > > On Wed, Jun 21, 2017 at 11:25 AM, Francesco Gastaldello (Staff) > <[email protected]> wrote: >> >> Hi all, >> >> this mail regard the development on my behalf for the dbfetch wrapper. More info on the service are here: http://www.ebi.ac.uk/Tools/dbfetch/dbfetch >> >> There is already an issue on the Biopython GitHub (#443) were me and Peter Cock are discussing how to place the module when it's going to be ready. >> >> He mentioned the possibility to place it in Bio/EBI/__init__.py, but he's concened that this won't comply with PEP8 guidelines. >> >> Any thoughts about it? >> >> Regards, >> >> Francesco >> >> Dbfetch < EMBL-EBI >> www.ebi.ac.uk >> Dbfetch Help. What is dbfetch? Dbfetch is an abbreviation for "database fetch". Dbfetch provides an easy way to retrieve entries from various databases at the EMBL ...