Adding overall coverage to blast-xml
John T <[email protected]> Mon, 11 Sep 2017 17:40:00 +0100
| Newsgroups | gmane.comp.python.bio.devel |
|---|---|
| Message-ID | <CAL0Rc+ytoOcwekRdE-hcBkM-O5byv3FkvdL-n5RzXf9791BUug@mail.gmail.com> |
--===============0844881354411472241== Content-Type: multipart/alternative; boundary="f403045c2a9ce515000558ec93b7" --f403045c2a9ce515000558ec93b7 Content-Type: text/plain; charset="UTF-8" Hi all, I've written a script that calculates the overall coverage for all HSP in an alignment, like that given on the BLAST homepage. Would it make sense to add this to Bio.Blast.Record.Alignment (and/or the BlastIO equivalent)? It's not something that's explicitly defined in the XML and so may be out of scope, but it is something that's given in the website version of BLAST results so people might reasonably expect it to be there. I'd add it as a @property so it as only calculated when required. I've never tried contributing to an open source project before so I didn't want to dive in and do something stupid. Cheers, John --f403045c2a9ce515000558ec93b7 Content-Type: text/html; charset="UTF-8" Content-Transfer-Encoding: quoted-printable <div dir=3D"ltr">Hi all,<div><br></div><div>I've written a script that = calculates the overall coverage for all HSP in an alignment, like that give= n on the BLAST homepage. Would it make sense to add this to Bio.Blast.Recor= d.Alignment (and/or the BlastIO equivalent)? It's not something that= 9;s explicitly defined in the XML and so may be out of scope, but it is som= ething that's given in the website version of BLAST results so people m= ight reasonably expect it to be there. I'd add it as a @property so it = as only calculated when required.</div><div><br></div><div>I've never t= ried contributing to an open source project before so I didn't want to = dive in and do something stupid.</div><div><br></div><div>Cheers,</div><div= >John</div><div><br></div></div> --f403045c2a9ce515000558ec93b7-- --===============0844881354411472241== Content-Type: text/plain; charset="us-ascii" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit Content-Disposition: inline _______________________________________________ Biopython-dev mailing list [email protected] http://mailman.open-bio.org/mailman/listinfo/biopython-dev --===============0844881354411472241==--