[Biopython] Deprecating BlastTextParser
Michiel de Hoon <[email protected]>
| Newsgroups | gmane.comp.python.bio.general |
|---|---|
| Message-ID | <[email protected]> |
Dear all, The blast_text module in Bio.SearchIO.BlastIO contains a parser for plain-text output from Blast.NCBI and Biopython itself recommend against parsing plain-text Blast output. As far as I can tell, this module currently has no documentation and no tests.The module relies on the deprecated module Bio.Blast.NCBIStandalone, which relies on the deprecated module Bio.ParserSupport. Can we deprecate Bio.SearchIO.BlastIO.blast_text ? Best,-Michiel _______________________________________________ Biopython mailing list - [email protected] http://mailman.open-bio.org/mailman/listinfo/biopython