Re: [Biopython] Deprecating BlastTextParser
Peter Cock <[email protected]>
| Newsgroups | gmane.comp.python.bio.general |
|---|---|
| Message-ID | <CAKVJ-_7zvYbyfswSU4FZPXatDgduYZk9rVgL1+p0mm-_1BewWQ@mail.gmail.com> |
Yes. If we wanted to do so, we could indeed remove the files Bio/Blast/NCBIStandalone.py and Bio/ParserSupport.py and put their code under Bio/SearchIO/BlastIO/_legacy.py or something (leading underscore to indicate private), or even inside Bio/SearchIO/BlastIO/blast_text.py itself. That would be cleaner. Peter On Thu, Nov 22, 2018 at 11:23 AM Michiel de Hoon <[email protected]> wrote: > > Then can we move Bio/Blast/NCBIStandalone.py and Bio/ParserSupport.py into Bio.SearchIO ? > Or integrate those two modules into Bio.SearchIO.BlastIO.blast_text ? > It's confusing to have two deprecated modules at the top level of Bio/*, and remind ourselves each time that actually they should not be removed. > > Best, > -Michiel _______________________________________________ Biopython mailing list - [email protected] http://mailman.open-bio.org/mailman/listinfo/biopython