[Biopython] Uniprot UNIfire new engine
Téletchéa Stéphane <[email protected]>
| Newsgroups | gmane.comp.python.bio.general |
|---|---|
| Message-ID | <[email protected]> |
Dear all, I had the opportunity to attend to a congress last week called JOBIM in Nantes (France). There was a very interesting talk by Rabie Saidi from the EBI about the new annotation engine called UNIfire. See for more information: - https://www.youtube.com/watch?v=_7wuufRp-GM - https://gitlab.ebi.ac.uk/uniprot-public/unifire/blob/master/misc/media/UniFIRE-URML.pptx - https://gitlab.ebi.ac.uk/uniprot-public/unifire The new format of the processed data is URML, and UNIfire could be used locally to produce a specific analysis from a given sequence, unrelated to upstream UNIPROT. Has anyone started to work on this? Looking at the reference SeqIO parser, I do not see it :-) (https://github.com/biopython/biopython/blob/master/Bio/SeqIO/UniprotIO.py) And yes, I agree to participate in it, but no I cannot handle it myself only, not being expert enough in biopython coding :-) Best Stéphane -- Assistant Professor in BioInformatics, UFIP, UMR 6286 CNRS, Team Protein Design In Silico UFR Sciences et Techniques, 2, rue de la Houssinière, Bât. 25, 44322 Nantes cedex 03, France Tél : +33 251 125 636 / Fax : +33 251 125 632 http://www.ufip.univ-nantes.fr/ - http://www.steletch.org _______________________________________________ Biopython mailing list - [email protected] https://mailman.open-bio.org/mailman/listinfo/biopython