Re: [Biopython] EMBL DNA records with locations referencing other sequences

That's more or less exactly what I had in mind. Do you have this on a
branch of a public git repository?

One tweak I was considering is accepting a dictionary-like object where
the values could be SeqRecord rather than Seq-like objects. The reason
being that those are easy to get via Bio.SeqIO.index(...) or
Bio.SeqIO.index_db(...), and should be perfect for when you have already
downloaded the referenced accessions (e.g. a folder of GenBank files).

Peter

On Fri, Oct 4, 2019 at 4:34 PM Adam Sjøgren <[email protected]> wrote:
>
> Adam writes:
>
> > If the location refers to other records, those records can be supplied
> > in an optional references dictionary, where the records will be looked
> > up by the ref (key) and the value is expected to be the same as the
>                                                               ↑
>                                                              type
> > parent_sequence parameter.
>
>
> --
>  "You make a hit by putting two flops together"               Adam Sjøgren
>                                                          [email protected]
>
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