Re: [Biopython] Volunteers for making Biopython release 1.77

I missed the original message due to aggressive spam filtering by our IT dept.
I'd be very much interested in managing a release, especially now the mid quarter rush is over. I've looked at the process and can pretty much get started straight away.
Chris Daley

Sent from my Verizon, Samsung Galaxy smartphone

________________________________
From: Biopython <[email protected]> on behalf of Peter Cock <[email protected]>
Sent: Wednesday, May 6, 2020 7:11:32 AM
To: Michiel de Hoon <[email protected]>
Cc: [email protected] <[email protected]>
Subject: Re: [Biopython] Volunteers for making Biopython release 1.77

Perhaps I will have to do it again? Anyway - are there any open issues you all think need to be fixed before the release? My initial thoughts are just these two:

NCBI BLAST v2.10.0 updates with arguments and DB changes:
https://github.com/biopython/biopython/issues/2863<https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fbiopython%2Fbiopython%2Fissues%2F2863&data=02%7C01%7Cdalchr28%40evergreen.edu%7Ca3e4be6ae49742f9e55208d7f1c786d4%7C22adcff7c06f49a68f2050711c40ddaa%7C0%7C0%7C637243711590068202&sdata=7juSQjCiB0KcxLgfeJfr%2F8%2BzFkxEgNDvEDAc2iocBos%3D&reserved=0>

UniProt release 2019_11 changes FT and CC lines
https://github.com/biopython/biopython/issues/2417<https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fbiopython%2Fbiopython%2Fissues%2F2417&data=02%7C01%7Cdalchr28%40evergreen.edu%7Ca3e4be6ae49742f9e55208d7f1c786d4%7C22adcff7c06f49a68f2050711c40ddaa%7C0%7C0%7C637243711590078195&sdata=Malo%2FtB05oyNRBn%2BHuffJMfwwHwXxEXkD3J%2FenfcXmE%3D&reserved=0>
(might be resolved already, need triage)

Peter

On Fri, May 1, 2020 at 10:01 AM Michiel de Hoon <[email protected]<mailto:[email protected]>> wrote:
Hi all,

Recent updates to Biopython have focused on removing the old Python2-specific code and cleaning up the code for Python3.
Since this is now essentially finished, now would be a good time to make the next Biopython release (1.77). Also, this will be the last release before we start removing alphabets from Biopython.

Is anybody (especially junior people) interested in managing this release?
The release process is now well documented:

https://biopython.org/wiki/Building_a_release<https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fbiopython.org%2Fwiki%2FBuilding_a_release&data=02%7C01%7Cdalchr28%40evergreen.edu%7Ca3e4be6ae49742f9e55208d7f1c786d4%7C22adcff7c06f49a68f2050711c40ddaa%7C0%7C0%7C637243711590078195&sdata=h1v8f%2Fp9HRVXHJd7FUa9JOlaXrxfaPThU0Nc1ZMwSVE%3D&reserved=0>

It also entails looking at recent bug reports and seeing if any of them are sufficiently important that they should be fixed before the release can be made.

If any volunteers could write to the mailing list, then that would be great.

Thanks!

-Michiel
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