[Biopython] BioPython 1.76 + Python 2.7.18 + test error

Doug Niven <[email protected]> Wed, 27 Jan 2021 18:41:57 -0800
Newsgroups gmane.comp.python.bio.general
Message-ID <[email protected]>
Hi Folks,

I’m rebuilding a workflow that uses Python 2.7.18 on a recently rebuilt server that previously had BioPython installed.

From the documentation it looks like the latest version of BioPython that works with Python 2.7 is version 1.76, which I’ve downloaded.

I’m doing the following steps:

python setup.py build
python setup.py 
test

however, the step "python setup.py test” stalls here:

test_NCBIXML ... ok
test_NCBI_BLAST_tools ... skipping. Install the NCBI BLAST+ command line tools if you want to use the Bio.Blast.Applications wrapper.
test_NCBI_qblast … 

Ideas, suggestions on how to get past this so I can complete the installation?

Thanks,

Doug
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