Re: [Biopython] Adding method to remove gaps in MultipleSeqAlignment

Michiel de Hoon <[email protected]> Wed, 23 Jun 2021 00:58:39 +0000 (UTC)
Newsgroups gmane.comp.python.bio.general
Message-ID <[email protected]>
 Hi Travis,
I would suggest to wait until the dust settles on `Alignment` / `MultipleSeqAlignment`, which hopefully won't take too long.
Best,-Michiel

    On Monday, June 21, 2021, 11:23:17 PM GMT+9, Travis Wrightsman <[email protected]> wrote:  
 
 Dear Biopython Devs,

I have code that I wrote to generate a new MultipleSeqAlignment that has 
columns removed if they contained gaps in the first sequence. If I 
generalized this code to return a MultipleSeqAlignment with gaps removed 
in any specified record row, would this be something Biopython would want 
included?

I also see the Alignment class looks to be the new, more general way to 
work with alignments in 1.80, should I implement this on 
MultipleSeqAlignment or Alignment?

Travis
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