[Biopython] Bioinformatics node-red module based on BioPython
Ferran Fàbregas <[email protected]> Mon, 31 Jan 2022 11:00:47 +0100
| Newsgroups | gmane.comp.python.bio.general |
|---|---|
| Message-ID | <CAAJHJUQmOT3vQgh18L7G37wEGiV5w-V0kF+xDCf2_bsFCQE_-A@mail.gmail.com> |
Hi all, Based on the feedback you gave me a few weeks ago I've been thinking about leaving the GUI for BioPython and focusing on a BioPython-based workflow tool. I'm aware that the Galaxy project also has a workflow tool, but I've been thinking of using something more modular, flexible and cross-functional from an IT point of view, so I think node-red could be a great option. https://nodered.org/ Using node-red you could integrate a new bioinformatics module based on BioPython with thousands of workflow nodes of all kinds, allowing almost everything you can ever need, from access to any database engine, to using an API of anything you can imagine. For example you can implement, without the need for programming and using only the workflow interface, applications such as a public Telegram bioinformatic bot (maybe not very useful, but surely fun). But node-red is based on node.js, not Python :( Although I have been doing some research, and it is possible to run python scripts from node-red. Maybe another option would be to port BioPython to Javascript, facilitating the integration with node-red infrastructure. What do you think about using BioPython as a backend for a bioinformatics module for the node-red workflows? I also created a ultrabasic test module package for node-red using npm (using native JS) https://www.npmjs.com/package/node-red-contrib-biotools Kind regards, F _______________________________________________ Biopython mailing list - [email protected] https://mailman.open-bio.org/mailman/listinfo/biopython