Re: [Biopython] Rotamer tool for Biopython
João Rodrigues <[email protected]> Thu, 1 Dec 2022 16:50:36 -0100
| Newsgroups | gmane.comp.python.bio.general |
|---|---|
| Message-ID | <CAB=-b2Ydzuu=7dNiNEvWKOiWYoZpTRRxfesrsKaOhhfWzt7q=w@mail.gmail.com> |
Hi Gábor, Glad to see you still working on this. It would be a welcome addition. Happy to review the PR. Best, João A quinta, 1/12/2022, 15:01, Gábor Erdős <[email protected]> escreveu: > Dear All! > > I am Gábor Erdős from Hungary. I developed a simple tool to introduce > rotamers to PBD structures using Biopython and I would like to know if such > a feature would be of interest for a pull request. It uses the Dunbrack > rotamer set, which as far as I know is fully open and can be distributed > freely. The rotamer set in itself is big, and I know Biopython should be as > light as possible, so my idea was to only include rotamers with higher than > 1% (or 5%) probability. > > The current code can be found here: https://github.com/gerdos/pyMUT > > Best regards, Gábor > _______________________________________________ > Biopython mailing list - [email protected] > https://mailman.open-bio.org/mailman/listinfo/biopython > _______________________________________________ Biopython mailing list - [email protected] https://mailman.open-bio.org/mailman/listinfo/biopython