Re: [Biopython] Biopython

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Cross reference https://github.com/biopython/biopython/issues/4785

Peter

On Mon, Aug 5, 2024 at 6:50=E2=80=AFPM Iddo Friedberg <[email protected]> wr=
ote:

> Hi surosh,
>
> I'm forwarding your question to the biopython mailing list.
>
> Iddo
>
> --
> Sent from a machine that promotes typos
>
> On Mon, Aug 5, 2024, 12:34 Surosh <[email protected]> wrote:
>
>> Hi, I just saw the tutorial pdf of Biopython and I have a quick question=
.
>> I was looking at the https://ncbi.github.io/blast-cloud/dev/api.html and
>> didnt see the two parameters that I was looking for. One of them which i=
s
>> on the BLAST web version is Max target sequences which is usually set to
>> 100 but I was looking for an option to set that parameter to 250. Also, =
in
>> the blast p option, the web version asks you if you wanna add an organis=
m
>> and I also dont know what the parameters for that one is in the NCBI API=
 or
>> in the Biopython option.
>>
> _______________________________________________
> Biopython mailing list  -  [email protected]
> https://mailman.open-bio.org/mailman/listinfo/biopython
>

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<div dir=3D"ltr"><div>Cross reference <a href=3D"https://github.com/biopyth=
on/biopython/issues/4785">https://github.com/biopython/biopython/issues/478=
5</a></div><div><br></div><div>Peter<br></div></div><br><div class=3D"gmail=
_quote"><div dir=3D"ltr" class=3D"gmail_attr">On Mon, Aug 5, 2024 at 6:50=
=E2=80=AFPM Iddo Friedberg &lt;<a href=3D"mailto:[email protected]">idoerg@g=
mail.com</a>&gt; wrote:<br></div><blockquote class=3D"gmail_quote" style=3D=
"margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-le=
ft:1ex"><div dir=3D"auto"><div>Hi surosh,=C2=A0</div><div dir=3D"auto"><br>=
</div><div dir=3D"auto">I&#39;m forwarding your question to the biopython m=
ailing list.=C2=A0</div><div dir=3D"auto"><br></div><div dir=3D"auto">Iddo<=
/div><div><br></div><div>--<br>Sent from a machine that promotes typos</div=
></div><br><div class=3D"gmail_quote"><div dir=3D"ltr" class=3D"gmail_attr"=
>On Mon, Aug 5, 2024, 12:34 Surosh &lt;<a href=3D"mailto:suroshbas90245@gma=
il.com" target=3D"_blank">[email protected]</a>&gt; wrote:<br></div>=
<blockquote class=3D"gmail_quote" style=3D"margin:0px 0px 0px 0.8ex;border-=
left:1px solid rgb(204,204,204);padding-left:1ex"><div dir=3D"ltr">Hi, I ju=
st saw the tutorial pdf of Biopython and I have a quick question. I was loo=
king at the=C2=A0<a href=3D"https://ncbi.github.io/blast-cloud/dev/api.html=
" rel=3D"noreferrer" target=3D"_blank">https://ncbi.github.io/blast-cloud/d=
ev/api.html</a>=C2=A0and didnt see the two parameters=C2=A0that I was looki=
ng for. One of them which is on the BLAST web version is Max target sequenc=
es which is usually set to 100 but I was looking for an option to set that =
parameter=C2=A0to 250. Also, in the blast p option, the web version asks yo=
u if you wanna add an organism and I also dont=C2=A0know what the parameter=
s=C2=A0for that one is in the NCBI API or in the Biopython option.<br></div=
>
</blockquote></div>
_______________________________________________<br>
Biopython mailing list=C2=A0 -=C2=A0 <a href=3D"mailto:Biopython@biopython.=
org" target=3D"_blank">[email protected]</a><br>
<a href=3D"https://mailman.open-bio.org/mailman/listinfo/biopython" rel=3D"=
noreferrer" target=3D"_blank">https://mailman.open-bio.org/mailman/listinfo=
/biopython</a><br>
</blockquote></div>

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_______________________________________________
Biopython mailing list  -  [email protected]
https://mailman.open-bio.org/mailman/listinfo/biopython

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