[Biopython] Planning Biopython 1.87
Peter Cock <[email protected]> Wed, 21 Jan 2026 14:29:28 +0000
| Newsgroups | gmane.comp.python.bio.general |
|---|---|
| Message-ID | <CAKVJ-_4+-2CD0uuzHtdWXNm5++TcPPXcdTmBKDMwLbdbAU578Q@mail.gmail.com> |
--===============5811409806257963843== Content-Type: multipart/alternative; boundary="0000000000002177df0648e6c158" --0000000000002177df0648e6c158 Content-Type: text/plain; charset="UTF-8" Dear Biopythoneers, I think once the following are resolved (they have pull requests), we should do the next release: * NumPy 2.4 compatibility https://github.com/biopython/biopython/issues/5135 * Using pyproject.toml rather than setup.py https://github.com/biopython/biopython/pull/5142 Ideally sooner rather than later as the PDB _ATOM_FORMAT_STRING glitch introduced in Biopython 1.86 seems to be hitting a lot of people: https://github.com/biopython/biopython/issues/5097 Is there anything else you think is urgent enough to wait on? Thanks, Peter --0000000000002177df0648e6c158 Content-Type: text/html; charset="UTF-8" Content-Transfer-Encoding: quoted-printable <div dir=3D"ltr"><div>Dear Biopythoneers,</div><div><br></div><div>I think = once the following are resolved (they have pull requests), we should do the= next release:</div><div><br></div><div>* NumPy 2.4 compatibility</div><div= >=C2=A0 =C2=A0<a href=3D"https://github.com/biopython/biopython/issues/5135= ">https://github.com/biopython/biopython/issues/5135</a></div><div><br></di= v><div>* Using pyproject.toml rather than setup.py</div><div>=C2=A0 =C2=A0<= a href=3D"https://github.com/biopython/biopython/pull/5142">https://github.= com/biopython/biopython/pull/5142</a></div><div><br></div><div>Ideally soon= er rather than later as the PDB=C2=A0_ATOM_FORMAT_STRING glitch introduced = in=C2=A0Biopython 1.86 seems to be hitting a lot of people:</div><div><a hr= ef=3D"https://github.com/biopython/biopython/issues/5097">https://github.co= m/biopython/biopython/issues/5097</a></div><div><br></div><div>Is there any= thing else you think is urgent enough to wait on?</div><div><br></div><div>= Thanks,</div><div><br></div><div>Peter</div></div> --0000000000002177df0648e6c158-- --===============5811409806257963843== Content-Type: text/plain; charset="us-ascii" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit Content-Disposition: inline _______________________________________________ Biopython mailing list - [email protected] https://mailman.open-bio.org/mailman/listinfo/biopython --===============5811409806257963843==--