[Biopython] Proteomics Decoys module for Biopython
BRUNO BECKER <[email protected]> Mon, 18 May 2026 01:40:30 +0000
| Newsgroups | gmane.comp.python.bio.general |
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Hello!
I think Biopython would benefit from a Decoys module, since decoy generatio=
n is an important step of proteomics workflows, and Biopython is already a =
useful tool for building proteomics pipelines. I think it could implement d=
ecoy SeqRecord Generators from provided SeqRecord Generators, together with=
specific functions that generate a decoy sequence from a given sequence, f=
ollowing a similar API to Biopython.SeqIO.
I am willing to develop the following module, implementing reverse, shuffle=
, pseudo-reverse and pseudo-shuffle decoy generators, the API, and unit tes=
ting.
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Hello!</div>
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nt, Aptos_MSFontService, Calibri, Helvetica, sans-serif; font-size: 12pt; c=
olor: rgb(0, 0, 0);">
I think Biopython would benefit from a Decoys module, since decoy generatio=
n is an important step of proteomics workflows, and Biopython is already a =
useful tool for building proteomics pipelines. I think it could implem=
ent decoy SeqRecord Generators from provided
SeqRecord Generators, together with specific functions that generate a dec=
oy sequence from a given sequence, following a similar API to Biopython.Seq=
IO.</div>
<div class=3D"elementToProof" style=3D"font-family: Aptos, Aptos_EmbeddedFo=
nt, Aptos_MSFontService, Calibri, Helvetica, sans-serif; font-size: 12pt; c=
olor: rgb(0, 0, 0);">
<br>
</div>
<div class=3D"elementToProof" style=3D"font-family: Aptos, Aptos_EmbeddedFo=
nt, Aptos_MSFontService, Calibri, Helvetica, sans-serif; font-size: 12pt; c=
olor: rgb(0, 0, 0);">
I am willing to develop the following module, implementing reverse, shuffle=
, pseudo-reverse and pseudo-shuffle decoy generators, the API, and unit tes=
ting.</div>
</body>
</html>
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