(no subject)
Kevin Conway <[email protected]> Mon, 10 Feb 2014 20:01:43 +0000
| Newsgroups | gmane.comp.python.pyrex |
|---|---|
| Message-ID | <[email protected]> |
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I tried to build Pyrex 0.9.9 from the tarball on the website. The build =
appeared to run properly, and the egg_info file is updated, but the result=
ing file /usr/local/bin/pyrexc is still 0.9.8.6, according to the result of=
/usr/local/bin/pyrexc -v.
I tried copying in a 0.9.9 version of pyrexc from another similar machin=
e, but then .../pyrexc -v fails with errors.
The two machines are Ubuntu Linux 12.04 LTS and Ubuntu 13.04 respectiv=
ely, and both have Cloud Biolinux installed. We installed an application pa=
ckage RSeQC successfully on the older machine, but the installation failed =
on the newer machine. The only related software that was older on the newer=
machine was Pyrex (0.9.8.6 versus 0.9.9). This matched the error messages =
from the RSeQC build, where some lines of Python code had syntax errors whe=
n compiled with pyrexc. Thus, I tried installing Pyrex 0.9.9 on the newer m=
achine, but the pyrexc file is still 0.9.8.6, and the RSeQC build is still =
failing.
Thanks in advance for any help you can provide. If more information woul=
d help, just let me know. Googling this problem hasn't turned up much. I am=
also trolling through the CloudBiolinux web site. My notes are included be=
low:
downloaded and built Pyrex 0.9.9
but ended up with pyrexc 0.9.8.6
here are the build results
###@#####:/home/####/Pyrex/Pyrex-0.9.9#<mailto:###@#####:/home/####/P=
yrex/Pyrex-0.9.9#> python setup.py install
running install
running build
running build_py
running build_scripts
running install_lib
running install_scripts
changing mode of /usr/local/bin/pyrexc to 755
running install_data
running install_egg_info
Removing /usr/local/lib/python2.7/dist-packages/Pyrex-0.9.9.egg-info
Writing /usr/local/lib/python2.7/dist-packages/Pyrex-0.9.9.egg-info
egg-info says 0.9.9
but pyrexc is 0.9.8.6
and build of RSeQC fails as before
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<div class=3D"WordSection1">
<p class=3D"MsoNormal"> I tried to build Pyrex 0.9.9 from the t=
arball on the website. The build appeared to run properly, and the egg_info=
file is updated, but the resulting file /usr/local/bin/pyrexc is sti=
ll 0.9.8.6, according to the result of /usr/local/bin/pyrexc
–v. <o:p></o:p></p>
<p class=3D"MsoNormal"> I tried copying in a 0.9.9 version=
of pyrexc from another similar machine, but then …/pyrexc –v f=
ails with errors.<o:p></o:p></p>
<p class=3D"MsoNormal"> The two machines are Ubuntu Linux 12.04=
LTS and Ubuntu 13.04 respectively, and both have Cloud Biolinu=
x installed. We installed an application package RSeQC successfully on the =
older machine, but the installation failed on the newer
machine. The only related software that was older on the newer machine was=
Pyrex (0.9.8.6 versus 0.9.9). This matched the error messages from the RSe=
QC build, where some lines of Python code had syntax errors when compiled w=
ith pyrexc. Thus, I tried installing
Pyrex 0.9.9 on the newer machine, but the pyrexc file is still 0.9.8.6, an=
d the RSeQC build is still failing.
<o:p></o:p></p>
<p class=3D"MsoNormal"> Thanks in advance for any help you=
can provide. If more information would help, just let me know. Googling th=
is problem hasn’t turned up much. I am also trolling through the Clou=
dBiolinux web site. My notes are included below:<o:p></o:p></p>
<p class=3D"MsoNormal"><o:p> </o:p></p>
<p class=3D"MsoNormal">downloaded and built Pyrex 0.9.9<o:p></o:p></p>
<p class=3D"MsoNormal"> but ended up with pyrexc 0.9.8.6<o:p></=
o:p></p>
<p class=3D"MsoNormal"> here are the build results<o:p></o:p></=
p>
<p class=3D"MsoNormal"> <a href=3D"mailto:###=
@#####:/home/####/Pyrex/Pyrex-0.9.9#">
###@#####:/home/####/Pyrex/Pyrex-0.9.9#</a> python setup.py install<o:p></o=
:p></p>
<p class=3D"MsoNormal"> running install<o:p><=
/o:p></p>
<p class=3D"MsoNormal"> running build<o:p></o=
:p></p>
<p class=3D"MsoNormal"> running build_py<o:p>=
</o:p></p>
<p class=3D"MsoNormal"> running build_scripts=
<o:p></o:p></p>
<p class=3D"MsoNormal"> running install_lib<o=
:p></o:p></p>
<p class=3D"MsoNormal"> running install_scrip=
ts<o:p></o:p></p>
<p class=3D"MsoNormal"> changing mode of /usr=
/local/bin/pyrexc to 755<o:p></o:p></p>
<p class=3D"MsoNormal"> running install_data<=
o:p></o:p></p>
<p class=3D"MsoNormal"> running install_egg_i=
nfo<o:p></o:p></p>
<p class=3D"MsoNormal"> Removing /usr/local/l=
ib/python2.7/dist-packages/Pyrex-0.9.9.egg-info<o:p></o:p></p>
<p class=3D"MsoNormal"> Writing /usr/local/li=
b/python2.7/dist-packages/Pyrex-0.9.9.egg-info<o:p></o:p></p>
<p class=3D"MsoNormal"> egg-info says 0.9.9<o:p></o:p></p>
<p class=3D"MsoNormal"> but pyrexc is 0.9.8.6=
<o:p></o:p></p>
<p class=3D"MsoNormal"> and build of RSeQC fa=
ils as before<o:p></o:p></p>
<p class=3D"MsoNormal"><o:p> </o:p></p>
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