autoconf/automake upgrade

Matt, what do you think about changing all auto*-related stuff in ASPseek
branch v_1_3 to use newer automake/autoconf (say, automake-1.6 and 
autoconf-2.53)?? There are some nifty features in never versions, as long
as some incompatibilities, so the change will not be backward-compatible.

Normal users (except those who grab the sources from CVS) will hardly 
notice the upgrade, as these are developer-only tools. As for the CVS 
users, I can set up nighly CVS tarballs building.
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