Bug#1144001: bitshuffle: FTBFS: ValueError: list.remove(x): x not in list

Source: bitshuffle
Version: 0.5.2-1
Severity: serious
Tags: ftbfs
Justification: fails to build from source (but built successfully in the past)
X-Debbugs-Cc: [email protected]

Dear maintainer,

bitshuffle FTBFS:

make[1]: Entering directory '/build/reproducible-path/bitshuffle-0.5.2'
CC=mpicc dh_auto_build
	pybuild --build -i python{version} -p "3.13 3.14" --parallel=6
I: pybuild plugin_pyproject:142: Building wheel for python3.13 with "build" module
I: pybuild base:385: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/bitshuffle-0.5.2/.pybuild/cpython3_3.13_bitshuffle  
* Building wheel...
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/pyproject_hooks/_in_process/_in_process.py", line 389, in <module>
    main()
    ~~~~^^
  File "/usr/lib/python3/dist-packages/pyproject_hooks/_in_process/_in_process.py", line 373, in main
    json_out["return_val"] = hook(**hook_input["kwargs"])
                             ~~~~^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/pyproject_hooks/_in_process/_in_process.py", line 280, in build_wheel
    return _build_backend().build_wheel(
           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
        wheel_directory, config_settings, metadata_directory
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
    )
    ^
  File "/usr/lib/python3/dist-packages/setuptools/build_meta.py", line 435, in build_wheel
    return _build(['bdist_wheel'])
  File "/usr/lib/python3/dist-packages/setuptools/build_meta.py", line 426, in _build
    return self._build_with_temp_dir(
           ~~~~~~~~~~~~~~~~~~~~~~~~~^
        cmd,
        ^^^^
    ...<3 lines>...
        self._arbitrary_args(config_settings),
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
    )
    ^
  File "/usr/lib/python3/dist-packages/setuptools/build_meta.py", line 407, in _build_with_temp_dir
    self.run_setup()
    ~~~~~~~~~~~~~~^^
  File "/usr/lib/python3/dist-packages/setuptools/build_meta.py", line 320, in run_setup
    exec(code, locals())
    ~~~~^^^^^^^^^^^^^^^^
  File "<string>", line 169, in <module>
ValueError: list.remove(x): x not in list

TIP pass --env-dir and --sdist-extract-dir to keep the build environment and sources, then see https://build.pypa.io/en/stable/how-to/troubleshooting.html#debug-a-failed-build for help debugging a failed build
ERROR Backend subprocess exited when trying to invoke build_wheel
E: pybuild pybuild:485: build: plugin pyproject failed with: exit code=1: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/bitshuffle-0.5.2/.pybuild/cpython3_3.13_bitshuffle  
I: pybuild plugin_pyproject:142: Building wheel for python3.14 with "build" module
I: pybuild base:385: python3.14 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/bitshuffle-0.5.2/.pybuild/cpython3_3.14_bitshuffle  
* Building wheel...
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/pyproject_hooks/_in_process/_in_process.py", line 389, in <module>
    main()
    ~~~~^^
  File "/usr/lib/python3/dist-packages/pyproject_hooks/_in_process/_in_process.py", line 373, in main
    json_out["return_val"] = hook(**hook_input["kwargs"])
                             ~~~~^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/pyproject_hooks/_in_process/_in_process.py", line 280, in build_wheel
    return _build_backend().build_wheel(
           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
        wheel_directory, config_settings, metadata_directory
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
    )
    ^
  File "/usr/lib/python3/dist-packages/setuptools/build_meta.py", line 435, in build_wheel
    return _build(['bdist_wheel'])
  File "/usr/lib/python3/dist-packages/setuptools/build_meta.py", line 426, in _build
    return self._build_with_temp_dir(
           ~~~~~~~~~~~~~~~~~~~~~~~~~^
        cmd,
        ^^^^
    ...<3 lines>...
        self._arbitrary_args(config_settings),
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
    )
    ^
  File "/usr/lib/python3/dist-packages/setuptools/build_meta.py", line 407, in _build_with_temp_dir
    self.run_setup()
    ~~~~~~~~~~~~~~^^
  File "/usr/lib/python3/dist-packages/setuptools/build_meta.py", line
  320, in run_setup
    exec(code, locals())
    ~~~~^^^^^^^^^^^^^^^^
  File "<string>", line 169, in <module>
ValueError: list.remove(x): x not in list

TIP pass --env-dir and --sdist-extract-dir to keep the build environment and sources, then see https://build.pypa.io/en/stable/how-to/troubleshooting.html#debug-a-failed-build for help debugging a failed build
ERROR Backend subprocess exited when trying to invoke build_wheel
E: pybuild pybuild:485: build: plugin pyproject failed with: exit code=1: python3.14 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/bitshuffle-0.5.2/.pybuild/cpython3_3.14_bitshuffle  
dh_auto_build: error: pybuild --build -i python{version} -p "3.13 3.14" --parallel=6 returned exit code 13
make[1]: *** [debian/rules:34: override_dh_auto_build] Error 25

See
https://buildd.debian.org/status/fetch.php?pkg=bitshuffle&arch=amd64&ver=0.5.2-1%2Bb5&stamp=1786283965&raw=0
for details.

Cheers