Re: provean: incompatible with cd-hit >= 4.8.1-4

Andreas Tille <[email protected]>
Newsgroups gmane.linux.debian.devel.medical
Message-ID <ZN8EeNdV7NJc/[email protected]>
Hi Andrius,

trying to find more readers on Debian Med list to possibly reach some
cd-hit users.

Am Fri, Aug 18, 2023 at 07:01:08AM +0300 schrieb Andrius Merkys:
> Hi Andreas,
> 
> On 2023-08-17 10:49, Andreas Tille wrote:
> > thanks for reporting this issue.  You were mentioning you want to come
> > up with a patch.  Since you seem to have dived into this issue deeper
> > I assume you will care for this bug.  If not please clarify the status
> > (or may be set the "help" tag).
> 
> I feel like working on it myself as I have a setup for reproducing it (it
> needs a version of NR database, ~100 GB) and I have located the approximate
> location in the code (cd-hit output parsing). It could help me a lot if
> someone knew the changes in cd-hit output since 4.8.1, though, as I am not a
> frequent user.

I'm not using cd-hit at all.  If nobody might respond here asking upstream
might help.

Kind regards
    Andreas.
lmpx.com only provides a reader for public news (NNTP) servers. It is not affiliated with the servers or forums shown here and is not responsible for the content of articles, which is written by their respective authors.