Rust help needed for packaging sourmash, the replacement for "khmer"
"Michael R. Crusoe" <[email protected]>
| Newsgroups | gmane.linux.debian.devel.medical,gmane.linux.debian.rust |
|---|---|
| Message-ID | <[email protected]> |
If we are removing the "khmer" bioinformatics tool for being abandoned upstream, then we need to finish packaging sourmash. Sourmash is a Python package with a rust core, and there are some rust crates that need brand NEW Debian packages according to "cargo-debstatus": - az v1.2.1 - counter v0.6.0 - murmurhash3 v0.0.5 - needletail v0.5.1 - histogram v0.11.0 - niffler v2.6.0 - proc-macro2-diagnostics v0.10.1 - piz v0.5.1 - codepage-437 v0.1.0 - rocksdb v0.21.0 - librocksdb-sys v0.11.0+8.1.1 - roots v0.0.8 - vec-collections v0.4.3 - sorted-iter v0.1.8 Any volunteers to crank out some new Debian packages for these rust crates? I only have a small amount of rust for Debian experience myself. Bonus crate that is optional: - finch v0.6.0 On 18/01/2019 16.08, Michael R. Crusoe wrote: > Package: wnpp > Severity: wishlist > Owner: Debian Med team <[email protected]> > > * Package name : sourmash > Version : 2.0.0~a11 > Upstream Author : C. Titus Brown <[email protected]>, Luiz C. Irber, Jr <[email protected]> > * URL : http://sourmash.readthedocs.io/en/latest/ > * License : BSD-3-Clause > Programming Lang: Python, C++ > Description : tools for comparing DNA sequences with MinHash sketches > > Compute MinHash signatures for nucleotide (DNA/RNA) and protein sequences. > . > MinHash sketches provide a lightweight way to store “signatures” of large DNA > or RNA sequence collections, and then compare or search them using a Jaccard > index. MinHash sketches can be used to identify samples, find similar samples, > identify data sets with shared sequences, and build phylogenetic trees > (Ondov et al. 2015). > . > sourmash provides a command line script, a Python library, and a CPython > module for MinHash sketches > > Sourmash is team maintained by Debian-Med at https://salsa.debian.org/med-team/sourmash
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