Re: Status of lambda-align

Sascha Steinbiss <[email protected]> Thu, 16 Oct 2025 12:41:07 +0200
Newsgroups gmane.linux.debian.devel.medical
Message-ID <[email protected]>
Hi Andreas,

thanks for taking a look!

> I had a quick look into lambda-align since I became aware of bug
> #1113092.  A fix is (as probably for all CMake 4 related bugs
> easiy and a NMU to delayed=12 pending - thanks as always to Adrian
> for his great QA work).

Yes, I noticed too that the bug was addressed, thanks for that!

> I had a look anyway and realised that we have an updated package in
> experimental which is using some newer seqan2 version.  I wonder whether
> this experiment was successfully and can be moved to unstable.  If not
> we probably should apply the same fix to the branch in experimental
> to make sure it keeps on building.

Maybe a good question for Enrico, since he's both the one who did the 
upload and someone with a solid SeqAn background :)

> As a general question:  There is lambda-align (featuring the latest
> version of the 1.x series), lambda-align2 (featuring the latest version
> of the 2.x series) and upstream has also issued lamda-align version 3.
> 
> Do we really need both old versions but not the latest one?

I can only imagine the command line usage or output format has changed 
enough across versions to have pipelines using lambda require a specific 
version. That's reason enough to keep version 1 i Debian, IMHO -- if 
there are still popular tools that use haven't migrated yet.

Cheers
Sascha
OpenPGP_signature.asc (application/pgp-signature, 833 B)
-----BEGIN PGP SIGNATURE-----
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=hJcc
-----END PGP SIGNATURE-----