Bug Squashing report for the second Sunday of the Advent

Étienne Mollier <[email protected]> Sun, 7 Dec 2025 17:38:19 +0100
Newsgroups	gmane.linux.debian.devel.medical
Message-ID	<[email protected]>
Hi all,

Here is a small report of all the doors that have been opened
since December 1st for this year's Advent calendar bug squashing
party:

1st door:

  1. #1121686: pyranges:
     FTBFS: E NameError: name 'long' is not defined
     closed by Alexandre Detiste;
  2. #1121714: orthanc-dicomweb:
     Missing build dependency on libjs-jquery
     closed by Sebastien Jodogne;
  3. #1121002: libstreamvbyte:
     Consider disabling the build on unsupported architectures
     closed by Étienne Mollier;

2nd door:

  4. #1121713: orthanc-wsi:
     FTBFS: /build/reproducible-path/orthanc-wsi-3.3+dfsg/Framework/Outputs/MultiframeDicomWriter.cpp:341:31: error: no matching function for call to …
     closed by Sebastien Jodogne;
  5. #1110576: dnaclust:
     ftbfs with boost1.88
     closed by Andreas Tille;
  6. #1121064: insilicoseq:
     please make the build reproducible
     closed by Étienne Mollier thanks to Chris Lamb;

3rd door:

  7. #1114370: seq-gen:
     FTBFS: seq-gen.c:143:6: error: conflicting types for 'ReadParams'; have 'void(int, char **)'
     closed by Andreas Tille;
  8. #1047218: seqan2:
     Fails to build source after successful build
     closed by Andreas Tille thanks to Santiago Vila;
  9. #917851: seqan2:
     FTBFS, alignment problem
     closed by Andreas Tille;
 10. #1119383: ctsim:
     please build using the default build flags
     closed by Étienne Mollier;

4th door:

 11. #1114120: gdcm:
     FTBFS: documentation generation fails
     closed by Andreas Tille;
 12. #1119595: transrate-tools:
     please build using the default build flags
     closed by Étienne Mollier;
 13. #1121007: nibabel:
     FTBFS with Python 3.14
     closed by Étienne Mollier;
 14. #1103890: king:
     Please switch to libpdfbox2-java
     closed by Pierre Gruet;
 15. #1107114: king:
     Invoking king just outputs garbage
     closed by Pierre Gruet;

5th door:

 16. #1114262: pigx-rnaseq:
     FTBFS: dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
     closed by Andreas Tille;
 17. #1119352: assembly-stats:
     please build using the default build flags
     closed by Étienne Mollier;

6th door:

 18. #1122039: mapdamage:
     FTBFS with Python 3.14: cd: can't cd to mapdamage
     closed by Étienne Mollier;
 19. #1106652: phyml:
     FTCBFS: cross compilation support reverted
     closed by Andreas Tille;
 20. #1121966: patsy:
     FTBFS with Python 3.14: ValueError: Cannot use capturing groups in re.Scanner
     closed by Stefano Rivera;

If I forgot or missed or misattributed bugs, then please shout.
Thanks to everyone involved and keep up the good work folks!  :)

PS: for those who wonder what happened to the first Sunday of
the Advent, it was technically on November 30th this year.

Have a nice day,  :)
-- 
  .''`.  Étienne Mollier <[email protected]>
 : :' :  pgp: 8f91 b227 c7d6 f2b1 948c  8236 793c f67e 8f0d 11da
 `. `'   sent from /dev/pts/1, please excuse my verbosity
   `-
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