Re: [Help] Please help building latest genometester

"Maarten L. Hekkelman" <[email protected]> Fri, 12 Dec 2025 09:56:19 +0100
Newsgroups gmane.linux.debian.devel.medical
Message-ID <[email protected]>
Hi,

The problem is, I guess, that the upstream package contains code to 
build multiple programs. The README only explains how to build 
gmer_counter, gmer_caller and gassembler. The wordmap.h file is used by 
gmasker, a program that is not mentioned. Question is, is it needed at 
all? Anyway, the file is missing from the upstream sources and there are 
no rules to create it, nor is it clear where it should come from.

So, either build only the three mentioned executables, leaving out 
gmasker, or report it upstream.

regards, -maarten

Op 12-12-2025 om 08:54 schreef Andreas Tille:
> Hi,
>
> while it was easy to fix bug #1107684 (thanks to Helmut for the patch) I
> have trouble building the latest upstream source as you can see in Salsa
> CI[1].  I somehow guess the header file "wordmap.h" is somehow missing
> in the upstream source - or is it some separate project?
>
> If nobody has an idea here we should probably report the problem upstream.
>
> Kind regards
>     Andreas.
>
> [1] https://salsa.debian.org/med-team/genometester/-/jobs/8736306#L1048
>