Bug#1140389: transition: hdf5

Emilio Pozuelo Monfort <[email protected]> Mon, 3 Aug 2026 17:33:42 +0200
Newsgroups gmane.linux.debian.devel.release
Message-ID <d2e411bb-2e88-407f-a943-5dfb48722e3b__25255.0293503859$1785771329$gmane$org@debian.org>
Control: tags -1 confirmed

On 19/06/2026 15:25, Gilles Filippini wrote:
> Package: release.debian.org
> Severity: normal
> User: [email protected]
> Usertags: transition
> 
> I hereby request a transition slot for hdf5 2.1.0 currently in experimental.
> 
> Reverse dependencies status:
> 
> * 154 total reverse dependencies
> * 118 checked OK
> * 7 not in testing (FTBFS in unstable)
>      dmrgpp                         KO # FTBFS - Not in testing
>      openms                         KO # FTBFS - Not in testing
>      ufo-filters                    KO # FTBFS - Not in testing
>      pyhst2                         KO # FTBFS - Not in testing
>      r-bioc-ioniser                 KO # FTBFS - Not in testing
>      siconos                        KO # FTBFS - Not in testing
>      r-bioc-gsva                    KO # FTBFS - Not in testing
> * 17 bugs opened with attached patch
>      gmtsar                         OK # Patch - https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139600
>      gwyddion                       OK # Patch - https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139602
>      h5py                           OK # Patch - https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139604
>      libtrexio                      OK # Patch - https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139605
>      libvbz-hdf-plugin              OK # Patch - https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139606
>      mapsembler2                    OK # Patch - https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139607
>      satdump                        OK # Patch - https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139608
>      slurm-wlm                      OK # Patch - https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139609
>      slurm-wlm-contrib              OK # Patch - https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139612
>      unifrac-tools                  OK # Patch - https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139615
>      freefem++                      OK # Patch - https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139617
>      libminc                        OK # Patch - https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139618
>      scilab                         OK # Patch - https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139619
>      dolfin                         OK # Patch - https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139620
>      cctbx                          OK # Patch - https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1140089
>      insighttoolkit5                OK # Patch - https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139623
>      silx                           OK # Patch - https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139569
> * 4 bugs opened with no fix yet
>      haskell-hdf5                   KO # https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139497
>      r-cran-hdf5r                   KO # https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139545
>      silo-llnl                      KO # https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139553
>      xmds2                          KO # https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139554
> * 1 RM bug for a package not suitable for unstable anymore
>      med-fichier                    KO https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139324
> * 7 not checked yet because of a failing build-dependency
>      hkl                            KO (haskell-hdf5)
>      r-bioc-rhdf5                   KO (r-bioc-rhdf5filters)
>      r-bioc-hdf5array               KO (r-bioc-rhdf5)
>      r-bioc-alabaster.matrix        KO (r-bioc-rhdf5)
>      r-bioc-bsseq                   KO (r-bioc-rhdf5)
>      r-bioc-dropletutils            KO (r-bioc-hdf5array)
>      r-bioc-mofa2                   KO (r-bioc-rhdf5)
> 
> I've set the usertag "hdf5-2.1.0-transition" with user "[email protected]"
> to track the related bugs.
> 
> https://bugs.debian.org/cgi-bin/[email protected];tag=hdf5-2.1.0-transition
Please go ahead and bump the severity of the remaining bugs to serious.

Cheers,
Emilio