Bug#1140389: transition: hdf5

Control: tags -1 pending

On 05/08/2026 13:29, Gilles Filippini wrote:
> Hi Emilio,
> 
> Emilio Pozuelo Monfort a écrit le 03/08/2026 à 17:33 :
>> Control: tags -1 confirmed
>>
>> On 19/06/2026 15:25, Gilles Filippini wrote:
>>> Package: release.debian.org
>>> Severity: normal
>>> User: [email protected]
>>> Usertags: transition
>>>
>>> I hereby request a transition slot for hdf5 2.1.0 currently in
>>> experimental.
>>>
>>> Reverse dependencies status:
>>>
>>> * 154 total reverse dependencies
>>> * 118 checked OK
>>> * 7 not in testing (FTBFS in unstable)
>>>       dmrgpp                         KO # FTBFS - Not in testing
>>>       openms                         KO # FTBFS - Not in testing
>>>       ufo-filters                    KO # FTBFS - Not in testing
>>>       pyhst2                         KO # FTBFS - Not in testing
>>>       r-bioc-ioniser                 KO # FTBFS - Not in testing
>>>       siconos                        KO # FTBFS - Not in testing
>>>       r-bioc-gsva                    KO # FTBFS - Not in testing
>>> * 17 bugs opened with attached patch
>>>       gmtsar                         OK # Patch - https://
>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139600
>>>       gwyddion                       OK # Patch - https://
>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139602
>>>       h5py                           OK # Patch - https://
>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139604
>>>       libtrexio                      OK # Patch - https://
>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139605
>>>       libvbz-hdf-plugin              OK # Patch - https://
>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139606
>>>       mapsembler2                    OK # Patch - https://
>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139607
>>>       satdump                        OK # Patch - https://
>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139608
>>>       slurm-wlm                      OK # Patch - https://
>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139609
>>>       slurm-wlm-contrib              OK # Patch - https://
>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139612
>>>       unifrac-tools                  OK # Patch - https://
>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139615
>>>       freefem++                      OK # Patch - https://
>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139617
>>>       libminc                        OK # Patch - https://
>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139618
>>>       scilab                         OK # Patch - https://
>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139619
>>>       dolfin                         OK # Patch - https://
>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139620
>>>       cctbx                          OK # Patch - https://
>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1140089
>>>       insighttoolkit5                OK # Patch - https://
>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139623
>>>       silx                           OK # Patch - https://
>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139569
>>> * 4 bugs opened with no fix yet
>>>       haskell-hdf5                   KO # https://bugs.debian.org/cgi-
>>> bin/bugreport.cgi?bug=1139497
>>>       r-cran-hdf5r                   KO # https://bugs.debian.org/cgi-
>>> bin/bugreport.cgi?bug=1139545
>>>       silo-llnl                      KO # https://bugs.debian.org/cgi-
>>> bin/bugreport.cgi?bug=1139553
>>>       xmds2                          KO # https://bugs.debian.org/cgi-
>>> bin/bugreport.cgi?bug=1139554
>>> * 1 RM bug for a package not suitable for unstable anymore
>>>       med-fichier                    KO https://bugs.debian.org/cgi-
>>> bin/bugreport.cgi?bug=1139324
>>> * 7 not checked yet because of a failing build-dependency
>>>       hkl                            KO (haskell-hdf5)
>>>       r-bioc-rhdf5                   KO (r-bioc-rhdf5filters)
>>>       r-bioc-hdf5array               KO (r-bioc-rhdf5)
>>>       r-bioc-alabaster.matrix        KO (r-bioc-rhdf5)
>>>       r-bioc-bsseq                   KO (r-bioc-rhdf5)
>>>       r-bioc-dropletutils            KO (r-bioc-hdf5array)
>>>       r-bioc-mofa2                   KO (r-bioc-rhdf5)
>>>
>>> I've set the usertag "hdf5-2.1.0-transition" with user "[email protected]"
>>> to track the related bugs.
>>>
>>> https://bugs.debian.org/cgi-bin/pkgreport.cgi?
>>> [email protected];tag=hdf5-2.1.0-transition
>> Please go ahead and bump the severity of the remaining bugs to serious.
> 
> Uploaded!

hdf5 has migrated, though some rdeps still need to migrate.

Cheers,
Emilio