Bug#1140389: transition: hdf5

Hi Emilio,

Emilio Pozuelo Monfort a écrit le 10/08/2026 à 12:55 :
> Control: tags -1 pending
> 
> On 05/08/2026 13:29, Gilles Filippini wrote:
>> Hi Emilio,
>>
>> Emilio Pozuelo Monfort a écrit le 03/08/2026 à 17:33 :
>>> Control: tags -1 confirmed
>>>
>>> On 19/06/2026 15:25, Gilles Filippini wrote:
>>>> Package: release.debian.org
>>>> Severity: normal
>>>> User: [email protected]
>>>> Usertags: transition
>>>>
>>>> I hereby request a transition slot for hdf5 2.1.0 currently in
>>>> experimental.
>>>>
>>>> Reverse dependencies status:
>>>>
>>>> * 154 total reverse dependencies
>>>> * 118 checked OK
>>>> * 7 not in testing (FTBFS in unstable)
>>>>       dmrgpp                         KO # FTBFS - Not in testing
>>>>       openms                         KO # FTBFS - Not in testing
>>>>       ufo-filters                    KO # FTBFS - Not in testing
>>>>       pyhst2                         KO # FTBFS - Not in testing
>>>>       r-bioc-ioniser                 KO # FTBFS - Not in testing
>>>>       siconos                        KO # FTBFS - Not in testing
>>>>       r-bioc-gsva                    KO # FTBFS - Not in testing
>>>> * 17 bugs opened with attached patch
>>>>       gmtsar                         OK # Patch - https://
>>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139600
>>>>       gwyddion                       OK # Patch - https://
>>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139602
>>>>       h5py                           OK # Patch - https://
>>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139604
>>>>       libtrexio                      OK # Patch - https://
>>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139605
>>>>       libvbz-hdf-plugin              OK # Patch - https://
>>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139606
>>>>       mapsembler2                    OK # Patch - https://
>>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139607
>>>>       satdump                        OK # Patch - https://
>>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139608
>>>>       slurm-wlm                      OK # Patch - https://
>>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139609
>>>>       slurm-wlm-contrib              OK # Patch - https://
>>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139612
>>>>       unifrac-tools                  OK # Patch - https://
>>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139615
>>>>       freefem++                      OK # Patch - https://
>>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139617
>>>>       libminc                        OK # Patch - https://
>>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139618
>>>>       scilab                         OK # Patch - https://
>>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139619
>>>>       dolfin                         OK # Patch - https://
>>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139620
>>>>       cctbx                          OK # Patch - https://
>>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1140089
>>>>       insighttoolkit5                OK # Patch - https://
>>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139623
>>>>       silx                           OK # Patch - https://
>>>> bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139569
>>>> * 4 bugs opened with no fix yet
>>>>       haskell-hdf5                   KO # https://bugs.debian.org/cgi-
>>>> bin/bugreport.cgi?bug=1139497
>>>>       r-cran-hdf5r                   KO # https://bugs.debian.org/cgi-
>>>> bin/bugreport.cgi?bug=1139545
>>>>       silo-llnl                      KO # https://bugs.debian.org/cgi-
>>>> bin/bugreport.cgi?bug=1139553
>>>>       xmds2                          KO # https://bugs.debian.org/cgi-
>>>> bin/bugreport.cgi?bug=1139554
>>>> * 1 RM bug for a package not suitable for unstable anymore
>>>>       med-fichier                    KO https://bugs.debian.org/cgi-
>>>> bin/bugreport.cgi?bug=1139324
>>>> * 7 not checked yet because of a failing build-dependency
>>>>       hkl                            KO (haskell-hdf5)
>>>>       r-bioc-rhdf5                   KO (r-bioc-rhdf5filters)
>>>>       r-bioc-hdf5array               KO (r-bioc-rhdf5)
>>>>       r-bioc-alabaster.matrix        KO (r-bioc-rhdf5)
>>>>       r-bioc-bsseq                   KO (r-bioc-rhdf5)
>>>>       r-bioc-dropletutils            KO (r-bioc-hdf5array)
>>>>       r-bioc-mofa2                   KO (r-bioc-rhdf5)
>>>>
>>>> I've set the usertag "hdf5-2.1.0-transition" with user 
>>>> "[email protected]"
>>>> to track the related bugs.
>>>>
>>>> https://bugs.debian.org/cgi-bin/pkgreport.cgi?
>>>> [email protected];tag=hdf5-2.1.0-transition
>>> Please go ahead and bump the severity of the remaining bugs to serious.
>>
>> Uploaded!
> 
> hdf5 has migrated, though some rdeps still need to migrate.

Great! Thanks a lot!

Best,
_g.

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