Bug#1143588: marked as done (ITP: r-bioc-cigarillo -- Efficient manipulation of CIGAR strings)

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Your message dated Thu, 06 Aug 2026 18:01:50 +0000
with message-id <[email protected]>
and subject line Bug#1143588: fixed in r-bioc-cigarillo 1.2.1+dfsg-1
has caused the Debian Bug report #1143588,
regarding ITP: r-bioc-cigarillo -- Efficient manipulation of CIGAR strings
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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--=20
1143588: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=3D1143588
Debian Bug Tracking System
Contact [email protected] with problems

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From: Steffen Moeller <[email protected]>
To: Debian Bug Tracking System <[email protected]>
Subject: ITP: r-bioc-cigarillo -- Efficient manipulation of CIGAR strings
Message-ID: <[email protected]>
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Date: Tue, 04 Aug 2026 17:08:12 +0200
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Package: wnpp
Severity: wishlist
Owner: Steffen Moeller <[email protected]>
X-Debbugs-Cc: [email protected], [email protected]

* Package name    : r-bioc-cigarillo
  Version         : 1.2.1
* URL             : https://bioconductor.org/packages/release/bioc/html/cigarillo.html
* License         : Artistic-2.0
  Programming Lang: R
  Description     : Efficient manipulation of CIGAR strings

 CIGAR stands for Concise Idiosyncratic Gapped Alignment Report.
 CIGAR strings are found in the BAM files produced by most aligners
 and in the AIRR-formatted output produced by IgBLAST.
 The cigarillo package provides functions to parse and inspect CIGAR
 strings, trim them, turn them into ranges of positions relative to
 the "query space" or "reference space", and project positions or
 sequences from one space to the other. Note that these operations
 are low-level operations that the user rarely needs to perform
 directly. More typically, they are performed behind the scene by
 higher-level functionality implemented in other packages like
 Bioconductor packages GenomicAlignments and igblastr.

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Debian: DAK
Debian-Changes: r-bioc-cigarillo_1.2.1+dfsg-1_amd64.changes
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Subject: Bug#1143588: fixed in r-bioc-cigarillo 1.2.1+dfsg-1
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Source: r-bioc-cigarillo
Source-Version: 1.2.1+dfsg-1
Done: Charles Plessy <[email protected]>

We believe that the bug you reported is fixed in the latest version of
r-bioc-cigarillo, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Charles Plessy <[email protected]> (supplier of updated r-bioc-cigarillo pack=
age)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])


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Format: 1.8
Date: Wed, 05 Aug 2026 12:49:11 +0900
Source: r-bioc-cigarillo
Binary: r-bioc-cigarillo r-bioc-cigarillo-dbgsym
Architecture: source amd64
Version: 1.2.1+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <[email protected]>
Changed-By: Charles Plessy <[email protected]>
Description:
 r-bioc-cigarillo - Efficient manipulation of CIGAR strings
Closes: 1143588
Changes:
 r-bioc-cigarillo (1.2.1+dfsg-1) unstable; urgency=3Dmedium
 .
   * Initial release (closes: #1143588)
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