Re: rpmbuild goes crazy writing duplicate files in /cd/usr/.... "Identical binaries are copied, not linked"...

Hmm. you use %makeinstall or make DESTDIR=%{buildroot} ?

What happen if you do rpmbuild -bi <spec> ?

Do you think it is a macro problem ? try to put %debug as first declaration
in your spec .

hth

On Tue, May 13, 2008 at 9:54 PM, devzero2000 <[email protected]> wrote:

> Without a reproducer it is difficult to help.
>
> Best regards
>
>
> On Tue, May 13, 2008 at 8:26 PM, Paul Johnson <[email protected]>
> wrote:
>
> > On Fedora 8 with rpm-devel-4.4.2.2-7.fc8, I'm having trouble getting a
> > package to build. The program compiles in a shell if I just do the
> > usual configure & make & make install, but when I try to use a spec
> > file to build it, a lot of macros come into play and I'm having a hard
> > time tracking them down.
> >
> > Please look down 30 lines for the extract debug-info line that
> > suddenly inserts the letters "/cd" into the middle of the path, and
> > then "duplicate" files get sent to /usr... and /cd/usr... in the
> > buildroot.  I'm quite baffled!
> >
> > test -z "/usr/lib/pkgconfig" || /bin/mkdir -p
> > "/var/tmp/jags-1.0.2-root/usr/lib/pkgconfig"
> >  /usr/bin/install -c -m 644 'jags.pc'
> > '/var/tmp/jags-1.0.2-root/usr/lib/pkgconfig/jags.pc'
> > make[2]: Leaving directory
> > `/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2/etc'
> > make[1]: Leaving directory
> > `/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2/etc'
> > Making install in win32
> > make[1]: Entering directory
> > `/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2/win32'
> > Making install in lapack
> > make[2]: Entering directory
> > `/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2/win32/lapack'
> > make[3]: Entering directory
> > `/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2/win32/lapack'
> > make[3]: Nothing to be done for `install-exec-am'.
> > make[3]: Nothing to be done for `install-data-am'.
> > make[3]: Leaving directory
> > `/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2/win32/lapack'
> > make[2]: Leaving directory
> > `/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2/win32/lapack'
> > make[2]: Entering directory
> > `/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2/win32'
> > make[3]: Entering directory
> > `/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2/win32'
> > make[3]: Nothing to be done for `install-exec-am'.
> > make[3]: Nothing to be done for `install-data-am'.
> > make[3]: Leaving directory
> > `/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2/win32'
> > make[2]: Leaving directory
> > `/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2/win32'
> > make[1]: Leaving directory
> > `/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2/win32'
> > make[1]: Entering directory
> > `/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2'
> > make[2]: Entering directory
> > `/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2'
> > make[2]: Nothing to be done for `install-exec-am'.
> > make[2]: Nothing to be done for `install-data-am'.
> > make[2]: Leaving directory
> > `/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2'
> > make[1]: Leaving directory
> > `/home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2'
> > + /usr/lib/rpm/find-debuginfo.sh
> > /home/pauljohn/LinuxDownloads/redhat/BUILD/JAGS-1.0.2
> > extracting debug info from
> > /var/tmp/jags-1.0.2-root/usr/libexec/jags-terminal
> > extracting debug info from
> > /var/tmp/jags-1.0.2-root/usr/lib/libjags.so.1.0.2
> > extracting debug info from
> > /var/tmp/jags-1.0.2-root/usr/lib/JAGS/modules/bugs.so
> > extracting debug info from
> > /var/tmp/jags-1.0.2-root/usr/lib/JAGS/modules/dic.so
> > extracting debug info from
> > /var/tmp/jags-1.0.2-root/usr/lib/JAGS/modules/msm.so
> > extracting debug info from
> > /var/tmp/jags-1.0.2-root/usr/lib/JAGS/modules/mix.so
> > extracting debug info from
> > /var/tmp/jags-1.0.2-root/usr/lib/JAGS/modules/basemod.so
> > extracting debug info from
> > /var/tmp/jags-1.0.2-root/usr/lib/libjrmath.so.0.0.0
> > extracting debug info from
> > /var/tmp/jags-1.0.2-root/cd/usr/libexec/jags-terminal
> > *** WARNING: identical binaries are copied, not linked:
> >        /cd/usr/libexec/jags-terminal
> >   and  /usr/libexec/jags-terminal
> > extracting debug info from
> > /var/tmp/jags-1.0.2-root/cd/usr/lib/libjags.so.1.0.2
> > *** WARNING: identical binaries are copied, not linked:
> >        /cd/usr/lib/libjags.so.1.0.2
> >   and  /usr/lib/libjags.so.1.0.2
> > extracting debug info from
> > /var/tmp/jags-1.0.2-root/cd/usr/lib/JAGS/modules/bugs.so
> > *** WARNING: identical binaries are copied, not linked:
> >        /cd/usr/lib/JAGS/modules/bugs.so
> >   and  /usr/lib/JAGS/modules/bugs.so
> > extracting debug info from
> > /var/tmp/jags-1.0.2-root/cd/usr/lib/JAGS/modules/dic.so
> > *** WARNING: identical binaries are copied, not linked:
> >        /cd/usr/lib/JAGS/modules/dic.so
> >   and  /usr/lib/JAGS/modules/dic.so
> > extracting debug info from
> > /var/tmp/jags-1.0.2-root/cd/usr/lib/JAGS/modules/msm.so
> > *** WARNING: identical binaries are copied, not linked:
> >        /cd/usr/lib/JAGS/modules/msm.so
> >   and  /usr/lib/JAGS/modules/msm.so
> > extracting debug info from
> > /var/tmp/jags-1.0.2-root/cd/usr/lib/JAGS/modules/mix.so
> > *** WARNING: identical binaries are copied, not linked:
> >        /cd/usr/lib/JAGS/modules/mix.so
> >   and  /usr/lib/JAGS/modules/mix.so
> > extracting debug info from
> > /var/tmp/jags-1.0.2-root/cd/usr/lib/JAGS/modules/basemod.so
> > *** WARNING: identical binaries are copied, not linked:
> >        /cd/usr/lib/JAGS/modules/basemod.so
> >   and  /usr/lib/JAGS/modules/basemod.so
> > extracting debug info from
> > /var/tmp/jags-1.0.2-root/cd/usr/lib/libjrmath.so.0.0.0
> > *** WARNING: identical binaries are copied, not linked:
> >        /cd/usr/lib/libjrmath.so.0.0.0
> >   and  /usr/lib/libjrmath.so.0.0.0
> > symlinked /usr/lib/debug/usr/lib/libjrmath.so.0.0.0.debug to
> > /usr/lib/debug/usr/lib/libjrmath.so.debug
> > symlinked /usr/lib/debug/usr/lib/libjags.so.1.0.2.debug to
> > /usr/lib/debug/usr/lib/libjags.so.debug
> > symlinked /usr/lib/debug/usr/lib/libjags.so.1.0.2.debug to
> > /usr/lib/debug/usr/lib/libjags.so.1.debug
> > symlinked /usr/lib/debug/usr/lib/libjrmath.so.0.0.0.debug to
> > /usr/lib/debug/usr/lib/libjrmath.so.0.debug
> > symlinked /usr/lib/debug/cd/usr/lib/libjrmath.so.0.0.0.debug to
> > /usr/lib/debug/cd/usr/lib/libjrmath.so.debug
> > symlinked /usr/lib/debug/cd/usr/lib/libjags.so.1.0.2.debug to
> > /usr/lib/debug/cd/usr/lib/libjags.so.debug
> > symlinked /usr/lib/debug/cd/usr/lib/libjags.so.1.0.2.debug to
> > /usr/lib/debug/cd/usr/lib/libjags.so.1.debug
> > symlinked /usr/lib/debug/cd/usr/lib/libjrmath.so.0.0.0.debug to
> > /usr/lib/debug/cd/usr/lib/libjrmath.so.0.debug
> > cpio: JAGS-0.98.0/src/lib/compiler/scanner.cc: Cannot stat: No such
> > file or directory
> > cpio: JAGS-1.0.2/src/terminal/.libs/jags-terminalS.c: Cannot stat: No
> > such file or directory
> > 2653 blocks
> > + /usr/lib/rpm/check-buildroot
> > + /usr/lib/rpm/redhat/brp-compress
> > + /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip
> > + /usr/lib/rpm/redhat/brp-strip-comment-note /usr/bin/strip
> > /usr/bin/objdump
> > + /usr/lib/rpm/brp-python-bytecompile
> > + /usr/lib/rpm/redhat/brp-python-hardlink
> > + /usr/lib/rpm/redhat/brp-java-repack-jars
> > Processing files: jags-1.0.2-1f8pj
> > Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.15765
> > + umask 022
> > + cd /home/pauljohn/LinuxDownloads/redhat/BUILD
> > + cd JAGS-1.0.2
> > + DOCDIR=/var/tmp/jags-1.0.2-root/usr/share/doc/jags-1.0.2
> > + export DOCDIR
> > + rm -rf /var/tmp/jags-1.0.2-root/usr/share/doc/jags-1.0.2
> > + /bin/mkdir -p /var/tmp/jags-1.0.2-root/usr/share/doc/jags-1.0.2
> > + cp -pr AUTHORS COPYING ChangeLog INSTALL NEWS README TODO
> > /var/tmp/jags-1.0.2-root/usr/share/doc/jags-1.0.2
> > + exit 0
> > Provides: basemod.so basemod.so.debug bugs.so bugs.so.debug dic.so
> > dic.so.debug libjags.so.1 libjags.so.1.0.2.debug libjrmath.so.0
> > libjrmath.so.0.0.0.debug mix.so mix.so.debug msm.so msm.so.debug
> > Requires(interp): /bin/sh /bin/sh /sbin/ldconfig /sbin/ldconfig
> > Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1
> > rpmlib(PayloadFilesHavePrefix) <= 4.0-1
> > Requires(pre): /bin/sh
> > Requires(post): /sbin/ldconfig ldconfig
> > Requires(preun): /bin/sh
> > Requires(postun): /sbin/ldconfig ldconfig
> > Requires: /bin/sh basemod.so bugs.so dic.so lapack libRmath
> > libblas.so.3 libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1.3)
> > libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.4) libgcc_s.so.1
> > libgcc_s.so.1(GCC_3.0) libgcc_s.so.1(GCC_4.0.0) libjags.so.1
> > libjrmath.so.0 liblapack.so.3 libm.so.6 libm.so.6(GLIBC_2.0)
> > libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.1)
> > libstdc++.so.6(GLIBCXX_3.4) mix.so msm.so rtld(GNU_HASH)
> > Processing files: jags-debuginfo-1.0.2-1f8pj
> > Provides: basemod.so.debug bugs.so.debug dic.so.debug
> > libjags.so.1.0.2.debug libjrmath.so.0.0.0.debug mix.so.debug
> > msm.so.debug
> > Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1
> > rpmlib(PayloadFilesHavePrefix) <= 4.0-1
> > Requires: basemod.so bugs.so dic.so libjags.so.1 libjrmath.so.0 mix.so
> > msm.so
> > Checking for unpackaged file(s): /usr/lib/rpm/check-files
> > /var/tmp/jags-1.0.2-root
> > error: Installed (but unpackaged) file(s) found:
> >   /cd/usr/bin/jags
> >   /cd/usr/include/JAGS/Console.h
> >   /cd/usr/include/JAGS/JRmath.h
> >   /cd/usr/include/JAGS/Module.h
> >   /cd/usr/include/JAGS/compiler/Compiler.h
> >   /cd/usr/include/JAGS/compiler/ConstantFactory.h
> >   /cd/usr/include/JAGS/compiler/Counter.h
> >   /cd/usr/include/JAGS/compiler/CounterTab.h
> >   /cd/usr/include/JAGS/compiler/LogicalFactory.h
> >   /cd/usr/include/JAGS/compiler/MixtureFactory.h
> >   /cd/usr/include/JAGS/compiler/NodeFactory.h
> >   /cd/usr/include/JAGS/compiler/ParseTree.h
> >   /cd/usr/include/JAGS/distribution/DistScalar.h
> >   /cd/usr/include/JAGS/distribution/DistScalarRmath.h
> >   /cd/usr/include/JAGS/distribution/DistTab.h
> >   /cd/usr/include/JAGS/distribution/Distribution.h
> >   /cd/usr/include/JAGS/distribution/RNG.h
> >   /cd/usr/include/JAGS/distribution/RNGFactory.h
> >   /cd/usr/include/JAGS/distribution/RmathRNG.h
> >   /cd/usr/include/JAGS/function/FuncTab.h
> >   /cd/usr/include/JAGS/function/Function.h
> >   /cd/usr/include/JAGS/function/InverseLinkFunc.h
> >   /cd/usr/include/JAGS/function/ScalarFunc.h
> >   /cd/usr/include/JAGS/graph/AggNode.h
> >   /cd/usr/include/JAGS/graph/ConstantNode.h
> >   /cd/usr/include/JAGS/graph/DeterministicNode.h
> >   /cd/usr/include/JAGS/graph/DevianceNode.h
> >   /cd/usr/include/JAGS/graph/Graph.h
> >   /cd/usr/include/JAGS/graph/GraphMarks.h
> >   /cd/usr/include/JAGS/graph/LogicalNode.h
> >   /cd/usr/include/JAGS/graph/MixtureNode.h
> >   /cd/usr/include/JAGS/graph/Node.h
> >   /cd/usr/include/JAGS/graph/NodeError.h
> >   /cd/usr/include/JAGS/graph/StochasticNode.h
> >   /cd/usr/include/JAGS/model/BUGSModel.h
> >   /cd/usr/include/JAGS/model/Model.h
> >   /cd/usr/include/JAGS/model/Monitor.h
> >   /cd/usr/include/JAGS/model/MonitorFactory.h
> >   /cd/usr/include/JAGS/model/NodeArray.h
> >   /cd/usr/include/JAGS/model/SymTab.h
> >   /cd/usr/include/JAGS/sampler/DensityMethod.h
> >   /cd/usr/include/JAGS/sampler/DensitySampler.h
> >   /cd/usr/include/JAGS/sampler/Linear.h
> >   /cd/usr/include/JAGS/sampler/Metropolis.h
> >   /cd/usr/include/JAGS/sampler/RWMetropolis.h
> >   /cd/usr/include/JAGS/sampler/Sampler.h
> >   /cd/usr/include/JAGS/sampler/SamplerFactory.h
> >   /cd/usr/include/JAGS/sampler/SingletonFactory.h
> >   /cd/usr/include/JAGS/sampler/Slicer.h
> >   /cd/usr/include/JAGS/sarray/Range.h
> >   /cd/usr/include/JAGS/sarray/RangeIterator.h
> >   /cd/usr/include/JAGS/sarray/SArray.h
> >   /cd/usr/include/JAGS/util/dim.h
> >   /cd/usr/include/JAGS/util/integer.h
> >   /cd/usr/include/JAGS/util/logical.h
> >   /cd/usr/include/JAGS/util/nainf.h
> >   /cd/usr/lib/JAGS/modules/basemod.la
> >   /cd/usr/lib/JAGS/modules/basemod.so
> >   /cd/usr/lib/JAGS/modules/bugs.la
> >   /cd/usr/lib/JAGS/modules/bugs.so
> >   /cd/usr/lib/JAGS/modules/dic.la
> >   /cd/usr/lib/JAGS/modules/dic.so
> >   /cd/usr/lib/JAGS/modules/mix.la
> >   /cd/usr/lib/JAGS/modules/mix.so
> >   /cd/usr/lib/JAGS/modules/msm.la
> >   /cd/usr/lib/JAGS/modules/msm.so
> >   /cd/usr/lib/libjags.la
> >   /cd/usr/lib/libjags.so
> >   /cd/usr/lib/libjags.so.1
> >   /cd/usr/lib/libjags.so.1.0.2
> >   /cd/usr/lib/libjrmath.la
> >   /cd/usr/lib/libjrmath.so
> >   /cd/usr/lib/libjrmath.so.0
> >   /cd/usr/lib/libjrmath.so.0.0.0
> >   /cd/usr/lib/pkgconfig/jags.pc
> >   /cd/usr/libexec/jags-terminal
> >   /usr/libexec/jags-terminal
> >
> >
> > RPM build errors:
> >    Installed (but unpackaged) file(s) found:
> >   /cd/usr/bin/jags
> >   /cd/usr/include/JAGS/Console.h
> >   /cd/usr/include/JAGS/JRmath.h
> >   /cd/usr/include/JAGS/Module.h
> >   /cd/usr/include/JAGS/compiler/Compiler.h
> >   /cd/usr/include/JAGS/compiler/ConstantFactory.h
> >   /cd/usr/include/JAGS/compiler/Counter.h
> >   /cd/usr/include/JAGS/compiler/CounterTab.h
> >   /cd/usr/include/JAGS/compiler/LogicalFactory.h
> >   /cd/usr/include/JAGS/compiler/MixtureFactory.h
> >   /cd/usr/include/JAGS/compiler/NodeFactory.h
> >   /cd/usr/include/JAGS/compiler/ParseTree.h
> >   /cd/usr/include/JAGS/distribution/DistScalar.h
> >   /cd/usr/include/JAGS/distribution/DistScalarRmath.h
> >   /cd/usr/include/JAGS/distribution/DistTab.h
> >   /cd/usr/include/JAGS/distribution/Distribution.h
> >   /cd/usr/include/JAGS/distribution/RNG.h
> >   /cd/usr/include/JAGS/distribution/RNGFactory.h
> >   /cd/usr/include/JAGS/distribution/RmathRNG.h
> >   /cd/usr/include/JAGS/function/FuncTab.h
> >   /cd/usr/include/JAGS/function/Function.h
> >   /cd/usr/include/JAGS/function/InverseLinkFunc.h
> >   /cd/usr/include/JAGS/function/ScalarFunc.h
> >   /cd/usr/include/JAGS/graph/AggNode.h
> >   /cd/usr/include/JAGS/graph/ConstantNode.h
> >   /cd/usr/include/JAGS/graph/DeterministicNode.h
> >   /cd/usr/include/JAGS/graph/DevianceNode.h
> >   /cd/usr/include/JAGS/graph/Graph.h
> >   /cd/usr/include/JAGS/graph/GraphMarks.h
> >   /cd/usr/include/JAGS/graph/LogicalNode.h
> >   /cd/usr/include/JAGS/graph/MixtureNode.h
> >   /cd/usr/include/JAGS/graph/Node.h
> >   /cd/usr/include/JAGS/graph/NodeError.h
> >   /cd/usr/include/JAGS/graph/StochasticNode.h
> >   /cd/usr/include/JAGS/model/BUGSModel.h
> >   /cd/usr/include/JAGS/model/Model.h
> >   /cd/usr/include/JAGS/model/Monitor.h
> >   /cd/usr/include/JAGS/model/MonitorFactory.h
> >   /cd/usr/include/JAGS/model/NodeArray.h
> >   /cd/usr/include/JAGS/model/SymTab.h
> >   /cd/usr/include/JAGS/sampler/DensityMethod.h
> >   /cd/usr/include/JAGS/sampler/DensitySampler.h
> >   /cd/usr/include/JAGS/sampler/Linear.h
> >   /cd/usr/include/JAGS/sampler/Metropolis.h
> >   /cd/usr/include/JAGS/sampler/RWMetropolis.h
> >   /cd/usr/include/JAGS/sampler/Sampler.h
> >   /cd/usr/include/JAGS/sampler/SamplerFactory.h
> >   /cd/usr/include/JAGS/sampler/SingletonFactory.h
> >   /cd/usr/include/JAGS/sampler/Slicer.h
> >   /cd/usr/include/JAGS/sarray/Range.h
> >   /cd/usr/include/JAGS/sarray/RangeIterator.h
> >   /cd/usr/include/JAGS/sarray/SArray.h
> >   /cd/usr/include/JAGS/util/dim.h
> >   /cd/usr/include/JAGS/util/integer.h
> >   /cd/usr/include/JAGS/util/logical.h
> >   /cd/usr/include/JAGS/util/nainf.h
> >   /cd/usr/lib/JAGS/modules/basemod.la
> >   /cd/usr/lib/JAGS/modules/basemod.so
> >   /cd/usr/lib/JAGS/modules/bugs.la
> >   /cd/usr/lib/JAGS/modules/bugs.so
> >   /cd/usr/lib/JAGS/modules/dic.la
> >   /cd/usr/lib/JAGS/modules/dic.so
> >   /cd/usr/lib/JAGS/modules/mix.la
> >   /cd/usr/lib/JAGS/modules/mix.so
> >   /cd/usr/lib/JAGS/modules/msm.la
> >   /cd/usr/lib/JAGS/modules/msm.so
> >   /cd/usr/lib/libjags.la
> >   /cd/usr/lib/libjags.so
> >   /cd/usr/lib/libjags.so.1
> >   /cd/usr/lib/libjags.so.1.0.2
> >   /cd/usr/lib/libjrmath.la
> >   /cd/usr/lib/libjrmath.so
> >   /cd/usr/lib/libjrmath.so.0
> >   /cd/usr/lib/libjrmath.so.0.0.0
> >   /cd/usr/lib/pkgconfig/jags.pc
> >   /cd/usr/libexec/jags-terminal
> >   /usr/libexec/jags-terminal
> >
> > --
> > Paul E. Johnson
> > Professor, Political Science
> > 1541 Lilac Lane, Room 504
> > University of Kansas
> >
> > _______________________________________________
> > Rpm-list mailing list
> > [email protected]
> > https://www.redhat.com/mailman/listinfo/rpm-list
> >
>
>

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