Is there a molecular biology suite project?

--===============0474567046==
Content-Type: multipart/alternative; boundary=000e0cd24d94ba291c046072cbf9

--000e0cd24d94ba291c046072cbf9
Content-Type: text/plain; charset=ISO-8859-1
Content-Transfer-Encoding: quoted-printable

Hello
I am a post doc at the Dundee University, in Scottland, UK. I mainly do
genetics and I need to be able to see, edit and align .abi files which are
DNA sequence chromatogram files. In our lab, we used to use vector NTI from
invitrogen (
http://www.invitrogen.com/site/us/en/home/LINNEA-Online-Guides/LINNEA-Commu=
nities/Vector-NTI-Community/Vector-NTI.html)
which was free for academy up to the last release... I never liked this
software but it was the one used in the lab, so... I usually use the APE
software (http://www.biology.utah.edu/jorgensen/wayned/ape/) but it can't
align multiple DNA sequence chromatograms, neither edit them... I was
wondering if there was a project that you know of aiming at developping thi=
s
kind of software or even a more complete one, since I think that there is n=
o
really user friendly, complete and free (as in freedom) such software. I
have been talking with my boss and some collegues, and there should be a
possibility to look and hoppefully get some funding for such project that
could involve many different labs (as far I know, most of the labs doing a
bit of molecular biology would be interested, and that means a lot of labs)=
!
Thanks a lot for your time.
Looking forward reading you

--=20
Pablo Ib=E1=F1ez Cruceyra, PhD
Dr. Anton Gartner Lab
Wellcome Trust Centre for Gene Regulation & Expression
College of Life Sciences
The University of Dundee
MSI/WTB/CIR Complex
Dow Street
Dundee DD1 5EH
Scotland
United Kingdom
E-mail: [email protected]
Office Phone: +44 (0) 1382-386 328
Lab Phone: +44 (0) 1382-386 326
Fax: +44 (0) 1382-388 072
Blog: http://pabloibanezcruceyra.blogspot.com/

--000e0cd24d94ba291c046072cbf9
Content-Type: text/html; charset=ISO-8859-1
Content-Transfer-Encoding: quoted-printable

Hello<br>I am a post doc at the Dundee University, in Scottland, UK. I
mainly do genetics and I need to be able to see, edit and align .abi
files which are DNA sequence chromatogram files. In our lab, we used to
use vector NTI from invitrogen (<a href=3D"http://www.invitrogen.com/site/u=
s/en/home/LINNEA-Online-Guides/LINNEA-Communities/Vector-NTI-Community/Vect=
or-NTI.html" target=3D"_blank">http://www.invitrogen.com/site/us/en/home/LI=
NNEA-Online-Guides/LINNEA-Communities/Vector-NTI-Community/Vector-NTI.html<=
/a>)
which was free for academy up to the last release... I never liked this
software but it was the one used in the lab, so... I usually use the
APE software (<a href=3D"http://www.biology.utah.edu/jorgensen/wayned/ape/"=
 target=3D"_blank">http://www.biology.utah.edu/jorgensen/wayned/ape/</a>)
but it can&#39;t align multiple DNA sequence chromatograms, neither edit
them... I was wondering if there was a project that you know of aiming
at developping this kind of software or even a more complete one, since
I think that there is no really user friendly, complete and free (as in
freedom) such software. I have been talking with my boss and some
collegues, and there should be a possibility to look and hoppefully get
some funding for such project that could involve many different labs
(as far I know, most of the labs doing a bit of molecular biology would
be interested, and that means a lot of labs)!<br>

Thanks a lot for your time.<br>Looking forward reading you<br clear=3D"all"=
><br>-- <br>Pablo Ib=E1=F1ez Cruceyra, PhD<br>Dr. Anton Gartner Lab<br>Well=
come Trust Centre for Gene Regulation &amp; Expression<br>College of Life S=
ciences<br>
The University of Dundee <br>MSI/WTB/CIR Complex <br>Dow Street <br>Dundee =
DD1 5EH<br>Scotland<br>United Kingdom<br>E-mail: <a href=3D"mailto:P.Ibanez=
[email protected]">[email protected]</a> <br>Office Phone: =
+44 (0) 1382-386 328<br>
Lab Phone: +44 (0) 1382-386 326<br>Fax: +44 (0) 1382-388 072<br>Blog: <a hr=
ef=3D"http://pabloibanezcruceyra.blogspot.com/">http://pabloibanezcruceyra.=
blogspot.com/</a><br>

--000e0cd24d94ba291c046072cbf9--



--===============0474567046==
Content-Type: text/plain; charset="us-ascii"
MIME-Version: 1.0
Content-Transfer-Encoding: 7bit
Content-Disposition: inline

_______________________________________________
Fsfe-france-sci mailing list
[email protected]
http://lists.gnu.org/mailman/listinfo/fsfe-france-sci

--===============0474567046==--