Re: Failed: phase compiling: r-base34-3.4.4-1 failed

On 11/4/19 2:17 AM, Chris Schram via Fink-beginners wrote:
> mkdir ../../../../library/tools/libs
> installing 'sysdata.rda'
> dyld: lazy symbol binding failed: Symbol not found: _timespec_get
>    Referenced from: /sw/src/fink.build/r-base34-3.4.4-1/R-3.4.4/lib/libR.dylib
>    Expected in: /usr/lib/libSystem.B.dylib
> 
> dyld: Symbol not found: _timespec_get
>    Referenced from: /sw/src/fink.build/r-base34-3.4.4-1/R-3.4.4/lib/libR.dylib
>    Expected in: /usr/lib/libSystem.B.dylib
> 
> /bin/sh: line 1:  8056 Done                    echo "tools:::sysdata2LazyLoadDB(\"./R/sysdata.rda\",\"../../../library/tools/R\")"
>        8057 Abort trap: 6           | R_DEFAULT_PACKAGES=NULL LC_ALL=C R_ENABLE_JIT=0 ../../../bin/R --vanilla --slave
> make[4]: *** [sysdata] Error 134
> make[3]: *** [all] Error 2
> make[2]: *** [R] Error 1
> make[1]: *** [R] Error 1
> make: *** [R] Error 1
> ### execution of /tmp/fink.Y44ZN failed, exit code 2
> ### execution of /tmp/fink.feRcp failed, exit code 2
> Removing runtime build-lock...
> Removing build-lock package...
> /sw/bin/dpkg-lockwait -r fink-buildlock-r-base34-3.4.4-1
> (Reading database ... 321852 files and directories currently installed.)
> Removing fink-buildlock-r-base34-3.4.4-1 ...
> Failed: phase compiling: r-base34-3.4.4-1 failed
> 
> Before reporting any errors, please run "fink selfupdate" and try again.
> 
> If you continue to have issues, please check to see if the FAQ on Fink's
> website solves the problem.  If not, ask on one (not both, please) of
> these mailing lists:
> 
> 	The Fink Users List <[email protected]>
> 	The Fink Beginners List <[email protected]>,
> 
> with a carbon copy to the maintainer:
> 
> 	BABA Yoshihiko <[email protected]>
> 
> Note that this is preferable to emailing just the maintainer directly,
> since most fink package maintainers do not have access to all possible
> hardware and software configurations.
> 
> Please try to include the complete error message in your report.  This
> generally consists of a compiler line starting with e.g. "gcc" or "g++"
> followed by the actual error output from the compiler.
> 
> Also include the following system information:
> Package manager version: 0.45.0
> Distribution version: selfupdate-git Sun Nov  3 21:50:43 2019, 10.14.5, x86_64
> Trees: local/main stable/main unstable/crypto unstable/main local/injected
> Xcode.app: 11.2
> Xcode command-line tools: 11.0.0.0.1.1559496560
> Max. Fink build jobs:  1

You have a mismatch between the Xcode.app and the Xcode command line 
tools. Do you still see the same error after upgrading your command line 
tools to 11.2?

Hanspeter


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