Re: Failed: phase compiling: gcc49-4.9.1-1000 failed on OS X 10.10

On 10/19/14, 4:16 AM, Xiaoguang Xue wrote:
> Hi, when I installed pymol-py27 and apbs packages on OS X 10.10, I got
> an error about gcc. Any help would be appreciated!
>
> ....
>
> make[3]: Leaving directory
> `/sw/src/fink.build/gcc49-4.9.1-1000/darwin_objdir/gcc'
>
> mkdir x86_64-apple-darwin14.0.0/libgcc
>
> Checking multilib configuration for libgcc...
>
> Configuring stage 1 in x86_64-apple-darwin14.0.0/libgcc
>
> configure: creating cache ./config.cache
>
> checking build system type... x86_64-apple-darwin14.0.0
>
> checking host system type... x86_64-apple-darwin14.0.0
>
> checking for --enable-version-specific-runtime-libs... no
>
> checking for a BSD-compatible install... /sw/bin/ginstall -c
>
> checking for gawk... awk
>
> checking for x86_64-apple-darwin14.0.0-ar... ar
>
> checking for x86_64-apple-darwin14.0.0-lipo... lipo
>
> checking for x86_64-apple-darwin14.0.0-nm...
> /sw/src/fink.build/gcc49-4.9.1-1000/darwin_objdir/./gcc/nm
>
> checking for x86_64-apple-darwin14.0.0-ranlib... ranlib
>
> checking for x86_64-apple-darwin14.0.0-strip... strip
>
> checking whether ln -s works... yes
>
> checking for x86_64-apple-darwin14.0.0-gcc...
> /sw/src/fink.build/gcc49-4.9.1-1000/darwin_objdir/./gcc/xgcc
> -B/sw/src/fink.build/gcc49-4.9.1-1000/darwin_objdir/./gcc/
> -B/sw/lib/gcc4.9/x86_64-apple-darwin14.0.0/bin/
> -B/sw/lib/gcc4.9/x86_64-apple-darwin14.0.0/lib/ -isystem
> /sw/lib/gcc4.9/x86_64-apple-darwin14.0.0/include -isystem
> /sw/lib/gcc4.9/x86_64-apple-darwin14.0.0/sys-include
>
> checking for suffix of object files... configure: error: in
> `/sw/src/fink.build/gcc49-4.9.1-1000/darwin_objdir/x86_64-apple-darwin14.0.0/libgcc':
>
> configure: error: cannot compute suffix of object files: cannot compile
>
> See `config.log' for more details.
>
> make[2]: *** [configure-stage1-target-libgcc] Error 1
>
> make[2]: Leaving directory
> `/sw/src/fink.build/gcc49-4.9.1-1000/darwin_objdir'
>
> make[1]: *** [stage1-bubble] Error 2
>
> make[1]: Leaving directory
> `/sw/src/fink.build/gcc49-4.9.1-1000/darwin_objdir'
>
> make: *** [bootstrap-lean] Error 2
>
> ### execution of /tmp/fink.7K4ps failed, exit code 2
>
> ### execution of /tmp/fink.WHw3V failed, exit code 2
>
> Removing runtime build-lock...
>
> Removing build-lock package...
>
> /sw/bin/dpkg-lockwait -r fink-buildlock-gcc49-4.9.1-1000
>
> (Reading database ... 22141 files and directories currently installed.)
>
> Removing fink-buildlock-gcc49-4.9.1-1000 ...
>
> Failed: phase compiling: gcc49-4.9.1-1000 failed
>
> ....
>
> Also include the following system information:
>
> Package manager version: 0.38.0
>
> Distribution version: selfupdate-rsync Sun Oct 19 13:00:35 2014, 10.10,
> x86_64
>
> Trees: local/main stable/main stable/crypto
>
> Xcode.app: 6.0.1
>
> Xcode command-line tools: 6.1.0.0.1.1413057044
>
> Max. Fink build jobs:  4
>
>
>
> --
> Xiaoguang Xue, PhD student
> Utrecht University
> Crystal & Structural Chemistry
> Padualaan 8. Room N807
> 3584 CH Utrecht
> The Netherlands
> Tel. +31-30-253-2383
>
>

You might try using the gcc49 packages from the 10.9 binary 
distribution.  You can download them manually from

http://bindist.finkmirrors.net/10.9/dists/stable/main/binary-darwin-x86_64/devel/

Or you can enable the 10.9 distribution by following the "10.9" 
instructions on that page--this will be treated as a "local" 
modification, so add the "deb" line in an appropriate place in your 
/sw/etc/apt/sources.list.

-- 
Alexander Hansen, Ph.D.
Fink User Liaison
My package updates: http://finkakh.wordpress.com/

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