bowtie2 giving help2man warnings(?) on Yosemite with exporter-pm installed
Alexander Hansen <[email protected]>
| Newsgroups | gmane.os.apple.fink.devel |
|---|---|
| Message-ID | <[email protected]> |
Hi. I saw this when building bowtie2 on Yosemite with exporter-pm-5.68-1 installed: make install PREFIX=/sw DESTDIR=/sw/src/fink.build/root-bowtie2-2.2.4-1 help2man --name="wrapper for bowtie2-align" --no-info \ `pwd`/bowtie2 > bowtie2.1 Constant subroutine main::LC_ALL redefined at /sw/lib/perl5/Exporter.pm line 66. at /sw/bin/help2man line 28. Prototype mismatch: sub main::LC_ALL () vs none at /sw/lib/perl5/Exporter.pm line 66. at /sw/bin/help2man line 28. help2man --name="building a colorspace index for bowtie2" --no-info \ `pwd`/bowtie2-build > bowtie2-build.1 Constant subroutine main::LC_ALL redefined at /sw/lib/perl5/Exporter.pm line 66. at /sw/bin/help2man line 28. Prototype mismatch: sub main::LC_ALL () vs none at /sw/lib/perl5/Exporter.pm line 66. at /sw/bin/help2man line 28. help2man --name="extracts information from a bowtie2 index" --no-info \ `pwd`/bowtie2-inspect > bowtie2-inspect.1 Constant subroutine main::LC_ALL redefined at /sw/lib/perl5/Exporter.pm line 66. at /sw/bin/help2man line 28. Prototype mismatch: sub main::LC_ALL () vs none at /sw/lib/perl5/Exporter.pm line 66. at /sw/bin/help2man line 28. help2man --name="ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences" --no-info \ `pwd`/bowtie2-align-s> bowtie2-align.1 Constant subroutine main::LC_ALL redefined at /sw/lib/perl5/Exporter.pm line 66. at /sw/bin/help2man line 28. Prototype mismatch: sub main::LC_ALL () vs none at /sw/lib/perl5/Exporter.pm line 66. at /sw/bin/help2man line 28. It may be harmless. I was just a bit unsettled to see the Perl functions in the output. :-) -- Alexander Hansen, Ph.D. Fink User Liaison ------------------------------------------------------------------------------ Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server from Actuate! Instantly Supercharge Your Business Reports and Dashboards with Interactivity, Sharing, Native Excel Exports, App Integration & more Get technology previously reserved for billion-dollar corporations, FREE http://pubads.g.doubleclick.net/gampad/clk?id=157005751&iu=/4140/ostg.clktrk _______________________________________________ Fink-devel mailing list [email protected] List archive: http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel