Re: bowtie2 giving help2man warnings(?) on Yosemite with exporter-pm installed

> On Nov 24, 2014, at 4:06 AM, Hanspeter Niederstrasser <[email protected]> wrote:
> 
>> <[email protected]> wrote:
>> Hi.  I saw this when building bowtie2 on Yosemite with exporter-pm-5.68-1
>> installed:
>> 
>> 
>> make install PREFIX=/sw DESTDIR=/sw/src/fink.build/root-bowtie2-2.2.4-1
>> help2man --name="wrapper for bowtie2-align" --no-info \
>> `pwd`/bowtie2 > bowtie2.1
>> Constant subroutine main::LC_ALL redefined at /sw/lib/perl5/Exporter.pm line
>> 66.
>>  at /sw/bin/help2man line 28.
>> Prototype mismatch: sub main::LC_ALL () vs none at /sw/lib/perl5/Exporter.pm
>> line 66.
>>  at /sw/bin/help2man line 28.
>> help2man --name="building a colorspace index for bowtie2" --no-info \
>> `pwd`/bowtie2-build > bowtie2-build.1
>> Constant subroutine main::LC_ALL redefined at /sw/lib/perl5/Exporter.pm line
>> 66.
>>  at /sw/bin/help2man line 28.
> 
> Can you try this change to 
> /sw/lib/perl5/5.16.2/darwin-thread-multi-2level/Locale/gettext.pm (fix 
> path to whatever system-perl is for you).  This file belongs to 
> locale-gettext-pm5XXX.  Maintainer cc'd in case it works.
> 
> --- /sw/lib/perl5/5.16.2/darwin-thread-multi-2level/Locale/gettext.pm
> +++ /sw/lib/perl5/5.16.2/darwin-thread-multi-2level/Locale/gettext.pm
> @@ -32,6 +32,7 @@
>  =cut
> 
>  use Carp;
> +use POSIX qw(:locale_h);
> 
>  require Exporter;
>  require DynaLoader;
> 
> Hanspeter
> 
> [1] https://rt.cpan.org/Public/Bug/Display.html?id=35680
> 

Works for me with Perl-5.18.2.

-- 
Alexander Hansen, Ph.D.
Fink User Liaison


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