Re: libxml2.2.dylib is incompatible with pymol-py27
Alexander Hansen <[email protected]>
| Newsgroups | gmane.os.apple.fink.devel |
|---|---|
| Message-ID | <[email protected]> |
> On Dec 17, 2014, at 1:46 PM, Xiaoguang Xue <[email protected]> wrote: > > Dear All > > I got an error after I install pymol-py27 through the latest fink. > > My system is OS X Yosemite 10.10.1 > > Traceback (most recent call last): > File "/sw/lib/python2.7/site-packages/pymol/__init__.py", line 71, in <module> > import pymol > File "/sw/lib/python2.7/site-packages/pymol/__init__.py", line 533, in <module> > import pymol._cmd > ImportError: dlopen(/sw/lib/python2.7/site-packages/pymol/_cmd.so, 2): Library not loaded: /sw/lib/libxml2.2.dylib > Referenced from: /sw/lib/python2.7/site-packages/pymol/_cmd.so > Reason: Incompatible library version: _cmd.so requires version 12.0.0 or later, but libxml2.2.dylib provides version 10.0.0 > > Does anyone have idea about how to fix it? > > Thanks! > > -- > Xiaoguang Xue, PhD student > Utrecht University > Crystal & Structural Chemistry > Padualaan 8. Room N807 > 3584 CH Utrecht > The Netherlands > Tel. +31-30-253-2383 Do you have DYLD_LIBRARY_PATH set in your environment? (“printenv DYLD_LIBRARY_PATH”) People often _think_ that is the right thing to do based on a false analogy with LD_LIBRARY_PATH in Linux, but what it does is completely override the default lookups. If you have that set, then what’s happening is pymol is trying to use a libxml2.2.dylib from something other than Fink based on that setting. If you don’t have DYLD_LIBRARY_PATH set, then what do you get from “otool -L /sw/lib/libxml2.2.dylib” ? -- Alexander Hansen, Ph.D. Fink User Liaison ------------------------------------------------------------------------------ Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server from Actuate! Instantly Supercharge Your Business Reports and Dashboards with Interactivity, Sharing, Native Excel Exports, App Integration & more Get technology previously reserved for billion-dollar corporations, FREE http://pubads.g.doubleclick.net/gampad/clk?id=164703151&iu=/4140/ostg.clktrk _______________________________________________ Fink-devel mailing list [email protected] List archive: http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel